BAC Information

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BAC

Clone NameMSMg01-496D22
Chromosome12 (Build37)
Map Location 26,684,050 - 26,854,051
singlet/doubletdoublet
Overlap genenone
Upstream geneC330002I19Rik, Id2, LOC100042973, LOC100042974, LOC668726
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496D22.T7 (MSMg01no496_d22.b1)MSMg01-496D22.TJ (MSMg01no496_d22.g1)
ACCAG573096AG573097
length781781
length of high quality
(start - end)		655 (46 - 700)601 (75 - 675)
definitionCHROMAT_FILE: MSMg01no496_d22.b1 PHD_FILE: MSMg01no496_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:31 2005CHROMAT_FILE: MSMg01no496_d22.g1 PHD_FILE: MSMg01no496_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,853,401 - 26,854,051)(26,684,050 - 26,684,650)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAATCTTTCTTCTACACATTAGAAAGCCAAGAAATTAGCATGTAA
AATGGCTAAGGAGTTTACATTCCTCTGCTTATTGTCAAAAATGTAAATGT
AGGTGCTGAAGCATGGGCTCATTTCAAAGCAAGAAGGGTCATGGATGAAC
TGAGTGAAAGAAAGGTGTCTCTCGCTGTTAGAAGAGACAGGGACTGTGGC
TGAGCCTTGTGATGGAGTTTTAGCCATTTCTGTGAATTTGACAGTGTCAT
AGACATAACCCAATTTGATCAAGTCATATAGAGAATTATGAAACCATGTT
GTTTGTAAAACAAGAATGAAAATCATCTGGCCAAATAGGCTTTTCTTAAG
GAAATGGTTAGACATAAATAATGTAAAATAAACTCATAGTTCAGCACACA
TGTTGGATAAATTAGACTGATAGCAATATTCTAAAAATCTTATTTTTACC
TTCATAAAGAAAGGAAAATTATTTACCAACATTTTTTTTCCATTTTTTAT
TAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCAT
ATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTG
GTGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCT
CTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGA
GTCAAAAGCTCCCGGGTACTGGTTAGTTCAN

NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTCATCATGATACAATCTGAAACC
TTCCAATAGGATCTCAACACACAGTGAGAAACAAGGAAAGGACGATTCCA
TGGAAATCAGAGAACAACAGTGGGCTGCAGTGAGAATACCAGGTGTCCAA
ATCTCAGAGGCAAACTTCTCCTGGTCTTCCCACAGCAAGTACATTGTGAG
GCAAGAAATTCCCAGCTGCCCTTGAGAATAGCGGTTTGCCTGAAATTCCT
ATTTTACATGTATTGTCTGAGTAAACTTCAGTGAGGCCCTGACTTAATTT
CCAAGTAATAATTCTAATGTTTGGTCGTAGAAAAAAATAGTTTCAATGTC
ATGCGGATATTTATAACAAACAATAGTGCTTGATGTAATAGACTCCAAAT
TACTTTCAATTGTCCTATTTGTGAATTATTTATGAACTTTTTACACATCT
GTAAACTCAGAATAAACCACTTTTAACCATTCCATACATAGGACAAGAAA
AATAAATAAATAAAAGGAGCAAGTATCTGCCATTTGAATCCCACTCACAA
TTTATCTACTTCACCCAACATAAGGTATCACATGTAAAAAAAATGCAATA
TTTCAGCTAACTAAATCTTTAACACTTAGATATTCATGTTGGATATTATA
TATTTATTAATGCCTGGCAGAAAATTAAATCTTTGAGAACTACTATGTAG
AAGCCAATAGCAGACATTTTTAGTTTAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_d22.b1 MSMg01no496_d22.b1 CHROMAT_FILE:
MSMg01no496_d22.b1 PHD_FILE: MSMg01no496_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:31 2005
         (655 letters)



>mm_chr12_26853366_26854420
          Length = 1055

 Score = 1236 bits (639), Expect = 0.0
 Identities = 648/651 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaatctttcttctacacattagaaagccaagaaattagcatgtaaaatggctaa 64
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gaattcaaatctaaattctacacattagaaagccaagaaattagcatgtaaaatggctaa 627

                                                                       
Query: 65  ggagtttacattcctctgcttattgtcaaaaatgtaaatgtaggtgctgaagcatgggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggagtttacattcctctgcttattgtcaaaaatgtaaatgtaggtgctgaagcatgggct 567

                                                                       
Query: 125 catttcaaagcaagaagggtcatggatgaactgagtgaaagaaaggtgtctctcgctgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 catttcaaagcaagaagggtcatggatgaactgagtgaaagaaaggtgtctctcgctgtt 507

                                                                       
Query: 185 agaagagacagggactgtggctgagccttgtgatggagttttagccatttctgtgaattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agaagagacagggactgtggctgagccttgtgatggagttttagccatttctgtgaattt 447

                                                                       
Query: 245 gacagtgtcatagacataacccaatttgatcaagtcatatagagaattatgaaaccatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gacagtgtcatagacataacccaatttgatcaagtcatatagagaattatgaaaccatgt 387

                                                                       
Query: 305 tgtttgtaaaacaagaatgaaaatcatctggccaaataggcttttcttaaggaaatggtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgtttgtaaaacaagaatgaaaatcatctggccaaataggcttttcttaaggaaatggtt 327

                                                                       
Query: 365 agacataaataatgtaaaataaactcatagttcagcacacatgttggataaattagactg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agacataaataatgtaaaataaactcatagttcagcacacatgttggataaattagactg 267

                                                                       
Query: 425 atagcaatattctaaaaatcttatttttaccttcataaagaaaggaaaattatttaccaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atagcaatattctaaaaatcttatttttaccttcataaagaaaggaaaattatttaccaa 207

                                                                       
Query: 485 cattttttttccattttttattaggtatttaactcatttacatttccaatgctataccaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cattttttttccattttttattaggtatttaactcatttacatttccaatgctataccaa 147

                                                                       
Query: 545 aagtcccccatatccacccacccccactcccctgcccacccactccccctttttggccct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 aagtcccccatatccacccacccccactcccctgcccacccactccccctttttggccct 87

                                                              
Query: 605 ggtgttcccctgtactggggcatataaagtttgcaagtccaatgggcctct 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  ggtgttcccctgtactggggcatataaagtttgcaagtccaatgggcctct 36


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no496_d22.g1 MSMg01no496_d22.g1 CHROMAT_FILE:
MSMg01no496_d22.g1 PHD_FILE: MSMg01no496_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:31 2005
         (601 letters)



>mm_chr12_26683850_26684850
          Length = 1001

 Score = 1162 bits (601), Expect = 0.0
 Identities = 601/601 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcatcatgatacaatctgaaaccttccaataggatctcaacacacagtgagaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcatcatgatacaatctgaaaccttccaataggatctcaacacacagtgagaaacaa 260

                                                                       
Query: 61  ggaaaggacgattccatggaaatcagagaacaacagtgggctgcagtgagaataccaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaggacgattccatggaaatcagagaacaacagtgggctgcagtgagaataccaggt 320

                                                                       
Query: 121 gtccaaatctcagaggcaaacttctcctggtcttcccacagcaagtacattgtgaggcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccaaatctcagaggcaaacttctcctggtcttcccacagcaagtacattgtgaggcaa 380

                                                                       
Query: 181 gaaattcccagctgcccttgagaatagcggtttgcctgaaattcctattttacatgtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaattcccagctgcccttgagaatagcggtttgcctgaaattcctattttacatgtatt 440

                                                                       
Query: 241 gtctgagtaaacttcagtgaggccctgacttaatttccaagtaataattctaatgtttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctgagtaaacttcagtgaggccctgacttaatttccaagtaataattctaatgtttgg 500

                                                                       
Query: 301 tcgtagaaaaaaatagtttcaatgtcatgcggatatttataacaaacaatagtgcttgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcgtagaaaaaaatagtttcaatgtcatgcggatatttataacaaacaatagtgcttgat 560

                                                                       
Query: 361 gtaatagactccaaattactttcaattgtcctatttgtgaattatttatgaactttttac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaatagactccaaattactttcaattgtcctatttgtgaattatttatgaactttttac 620

                                                                       
Query: 421 acatctgtaaactcagaataaaccacttttaaccattccatacataggacaagaaaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatctgtaaactcagaataaaccacttttaaccattccatacataggacaagaaaaata 680

                                                                       
Query: 481 aataaataaaaggagcaagtatctgccatttgaatcccactcacaatttatctacttcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aataaataaaaggagcaagtatctgccatttgaatcccactcacaatttatctacttcac 740

                                                                       
Query: 541 ccaacataaggtatcacatgtaaaaaaaatgcaatatttcagctaactaaatctttaaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaacataaggtatcacatgtaaaaaaaatgcaatatttcagctaactaaatctttaaca 800

            
Query: 601 c 601
           |
Sbjct: 801 c 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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