NNNCCACCTATAATTTGCGGTCGCTAAACGACTCACAATCAAAAGAGGAG
CCGCGGAATTCCCANTTGCACCAACATAGCAGATGGGGATGTGGGGAGGT
CTCTCAGGTCCCTGCTCAGCCCCCTGGACAGACACATGACCACTCAGAGG
TGACAGTTGCTGTCTCAAAGGAGGATGTTTGCTTCGGGTCTGACCAGAAG
CTATGAGTTTCATATGGGTTCTAGGTAATGGTAGCTAGGAAGAACAAAGT
ACAGAGAAAGCCATCCTTGAGAGAGAAGGGGGGAGGGGATTTATCTTTTG
CTTCAGGCATGGTTTGTAAGTTTTTATGGTGTGAGTAATTTTTTTTATTC
TACTTCATATTTAATTGGATTTTTGCCTTATATTTGTATTTAAAAATTAT
ATTTAAAAGTACTTGGCCCCACCCAAAAGCATTTAAACGAAACAACCCCA
CACCTCTCTCCATGGCCTGTACGTCCACAATGGCAGTAAAGGGAGAACGT
GATGAGGCTTCATGTTATGGAGTATGTCCATCCCAGGGTGTGTAGGGGGG
AGGGGGTCAGCCTGGATTGTGTCCATCCCAGGGTGTGTTTTTAGGAGGGG
TTCATCCCGTTAAATGCCCTTATGTTGTGAGTTCTGCTGCGGCATAAAAC
CGGGGCTTTTTTTCCCTATATCTTATTCTGAACTGGTTTATTTTTTTTTA
CCCCCTTTTTTTACCGATTTTCTTCGTTTTTTACCCCGCT

NNNCCTGTCCCCCCCTTTCACACNNNNNNNANCNNNNNATTTCCCCCAAA
ATTCTTGTAAATTTTCCACTTTTCGTTTTTTTTTTTATTTTATTTATTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTACNGAACAATCTTCTCTTTTTTCNNNNNCGNNNTT
CGNNNNNNNNTTNNNNNCNNNNNCCCCTTTTTNNNNNNNNNNTCTATTTT
CTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNN
NNCNCNCCNCNNNNCCNCNCNNNNCCCCNCCCCCCCCNNCNNNNNCCNNA
NCACNAAAAAAAAAANCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNCNNNNNNNNNNNNN
CCTCNNNNNCACGNNNNNNNNNNCCNNNNNNNCCCNNCCCNNCCCNNNNN
NNCCCCCCCCNNNCCNNNCNNCCCNCCCCCCCCCCNNNCCNCCCCCCCCC
CCNNNNCNNNCCNNCNCCCCCNCNNCNCCCNNCNNNNCCCCCCCCCNCCC
CNNNNNNNTTCCCCCCCCCNNCNNNCNNCNNNNNNNCNNCNNNNNNNNNN
NNNCCNNNNNNNNNNNNCCNCNCNCCCNNNCCCCCCCCCCCCCCCNCCCC
CTCCACCCTTTTTTTTCTTTTTT

Query= MSMg01no496_h01.b1 MSMg01no496_h01.b1 CHROMAT_FILE:
MSMg01no496_h01.b1 PHD_FILE: MSMg01no496_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:46 2005
         (480 letters)



>mm_chr12_34027411_34028282
          Length = 872

 Score =  716 bits (370), Expect = 0.0
 Identities = 460/526 (87%), Gaps = 60/526 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatggggatgtggggaggtctctcaggtccctgctcagccccctggacagacacatga 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 cagatggggatgtggggagatctctcaggtccctgctcagccccctggacagacacatga 220

                                                                       
Query: 61  ccactcagaggtgacagttgctgtctcaaaggaggatgtttgcttcgggtctg------- 113
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 221 ccactcagaggtgacagttgctgtctcaaaggaggatgtttgcttcgggtctgttgtaga 280

                                                                       
Query: 114 ---------------------------------accagaagctatgagtttcatatgggt 140
                                            |||||||||||||||||||||||||||
Sbjct: 281 actaaacctggctttttctgctttctccaaatgaccagaagctatgagtttcatatgggt 340

                                                                       
Query: 141 tctaggtaatggtagctaggaagaacaaagtacagagaaagccatccttgagagagaagg 200
           |||||||||||||||||||||||||||       |||||||||||||||||||||||| |
Sbjct: 341 tctaggtaatggtagctaggaagaaca-------gagaaagccatccttgagagagaaag 393

                                                                       
Query: 201 ggggaggggatttatcttttgcttcaggcatggtttgtaagttttt-----atggtgtga 255
           ||||  |||||||||||||||||||||||||||||||||||          |||||||||
Sbjct: 394 gggg--gggatttatcttttgcttcaggcatggtttgtaag-----cacccatggtgtga 446

                                                                       
Query: 256 gtaatttttttt-attctacttcatatttaattggatttttgccttatatttgtatttaa 314
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtaatttttttttattctacttcatatttaattggatttttgccttatatttgtatttaa 506

                                                                       
Query: 315 aaattatatttaaaagtacttggccccacccaaaagcatttaaacgaaacaaccccacac 374
           ||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct: 507 aaattatatttaaaagtacttgggcctacccaaaagcatttaaacgaaacagccccacac 566

                                                                       
Query: 375 ctctctccatggcctgtacgtccacaatggcagtaaagggagaacgtgatgaggcttcat 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctctctccatggcctgtacgtccacaatggcagtaaagggagaacgtgatgaggcttcat 626

                                                         
Query: 435 gttatggagtatgtccatcccagggtgtgtaggggggagggggtca 480
           |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 627 gttatggaatatgtccatcccagggtgtgtaggggggagggggtca 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 872
Length adjustment: 10
Effective length of query: 470
Effective length of database: 862
Effective search space:   405140
Effective search space used:   405140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)