Query= MSMg01no498_l05.b1 MSMg01no498_l05.b1 CHROMAT_FILE:
MSMg01no498_l05.b1 PHD_FILE: MSMg01no498_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:51 2005
(531 letters)
>mm_chr12_95973185_95974115
Length = 931
Score = 928 bits (480), Expect = 0.0
Identities = 521/538 (96%), Gaps = 10/538 (1%)
Strand = Plus / Minus
Query: 1 atatgagctatcaaaacacactgaccagatcagtaatctagtgtaatggaaaagcaaata 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 666 atatgagctatcaaaacacattgaccagatcagtaatctagtgtaatggaaaagcaaata 607
Query: 61 aatatccttacttcaaaattatatt-ttttcagtatttgactaataattatttagctttg 119
||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||
Sbjct: 606 aatatccttacttcaaaattatattgtttt-agtatttgactaataattatttaactttg 548
Query: 120 taagtgagcatggtaagagcttttcttgaaagtgaaaaaataaaatttaccctttttcag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taagtgagcatggtaagagcttttcttgaaagtgaaaaaataaaatttaccctttttcag 488
Query: 180 tttcggtacgacttgcaaattatcctttcttggcttcctttggcatgaactctagggatt 239
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 487 tttcagtacgacttgcaaattatcctttcttggcttcctttggcataaactctagggatt 428
Query: 240 gctcttctctttctta--tgattaatcattgatttggtttttttcaaaggcatacatatt 297
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gctcttctctttc--aagggattaatcattgatttggtttttttcaaaggcatacatatt 370
Query: 298 ttatctatccatatttctgttcaatatattttctcctactaatttattatatattcgttg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttatctatccatatttctgttcaatatattttctcctactaatttattatatattcgttg 310
Query: 358 atacagagtctatagagtttaagttgggccttaaatgcatggcaatcgtttttcaacctg 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atacagagtctatatagtttaagttgggccttaaatgcatggcaatcgtttttcaacctg 250
Query: 418 ctgagtgctaggatgatattcatgtccaccatacctaggcttccaaaaaatatatataaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctgagtgctaggatgatattcatgtccaccatacctaggcttccaaaaaatatatataaa 190
Query: 478 tgga----atatatatatatatatatatatatatatatatatatatatatattcactg 531
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 189 tggaatatatatatatatatatatatatatatatatatatatatatacatattcactg 132
Score = 87.7 bits (45), Expect = 2e-21
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 483 tatatatatatatatatatatatatatatatatatatatatattc 527
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tatatatatatatatatatatatatatatatatatatatatattc 187
Score = 81.9 bits (42), Expect = 1e-19
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 480 gaatatatatatatatatatatatatatatatatatatatatatat 525
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gaatatgtatatatatatatatatatatatatatatatatatatat 181
Score = 81.9 bits (42), Expect = 1e-19
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 482 atatatatatatatatatatatatatatatatatatatatat 523
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 atatatatatatatatatatatatatatatatatatatatat 185
Score = 72.3 bits (37), Expect = 8e-17
Identities = 54/63 (85%), Gaps = 8/63 (12%)
Strand = Plus / Plus
Query: 467 atatatataaatggaatatatatatatatatatatatatatatatat---atatatatat 523
||||||||| | |||||||||||||||||||||||||||||||| || |||||||
Sbjct: 144 atatatata--t---atatatatatatatatatatatatatatatattccatttatatat 198
Query: 524 att 526
|||
Sbjct: 199 att 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 178
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 7
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_l05.g1 MSMg01no498_l05.g1 CHROMAT_FILE:
MSMg01no498_l05.g1 PHD_FILE: MSMg01no498_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:51 2005
(559 letters)
>mm_chr12_95819291_95820249
Length = 959
Score = 1036 bits (536), Expect = 0.0
Identities = 551/556 (99%), Gaps = 2/556 (0%)
Strand = Plus / Plus
Query: 1 acttctcgctgtccatggatatacctgattgccaacactaggtagtggaatgtgatggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttctcgctgtccatggatatacctgattgccaacactaggtagtggaatgtgatggtt 260
Query: 61 aaaataacaattgtcccatatgttcataaatttggatagttggtcaccagttgttaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaataacaattgtcccatatgttcataaatttggatagttggtcaccagttgttaaaaa 320
Query: 121 agttttggaaaaattaaggatagaaggccttgttggaggagatgtgtcacaggtctccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttttggaaaaattaaggatagaaggccttgttggaggagatgtgtcacaggtctccta 380
Query: 181 tcctatgatcactcaggtttcaaaatacatgtatgatgcacagtgttcttcctttgccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctatgatcactcaggtttcaaaatacatgtatgatgcacagtgttcttcctttgccct 440
Query: 241 gtgactgtgcttc-ataatatgagctcttgctgttccttcattcagccatcatggactct 299
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgactgtgca-cgaaaatatgagctcttgctgttccttcattcagccatcatggactct 499
Query: 300 agcactctgaaatcataaaccaaatcaaatattctatcttattaaagaagtgaacaaagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agcactctgaaatcataaaccaaatcaaatattctatcttattaaagaagtgaacaaagt 559
Query: 360 atagtattctgataggcaaagtgagatgctattaattgtagtttttctttctatgatgag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atagtattctgataggcaaagtgagatgctattaattgtagtttttctttctatgatgag 619
Query: 420 taatgtactacgagatatgtatctgaaaaggaaagcctacataggtcattttctctgaga 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taatgtactaagagatatgtatctgaaaaggaaagcctacataggtcattttctctgaga 679
Query: 480 aatattaaaaccttgcttgtattccattttcagactttctaattcagattataagctgta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatattaaaaccttgcttgtattccattttcagactttctaattcagattataagctgta 739
Query: 540 tttgtatgttttcttt 555
||||||||||||||||
Sbjct: 740 tttgtatgttttcttt 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
