BAC Information

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BAC

Clone NameMSMg01-499H15
Chromosome12 (Build37)
Map Location 27,119,938 - 27,120,565
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042973, LOC100042974, LOC668726, Rnf144
Downstream geneRsad2, Tyki, LOC668731, 1700020D12Rik, Sox11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499H15.T7 (MSMg01no499_h15.b1)MSMg01-499H15.TJ (MSMg01no499_h15.g1)
ACCAG575549AG575550
length707697
length of high quality
(start - end)
564 (47 - 610)628 (57 - 684)
definitionCHROMAT_FILE: MSMg01no499_h15.b1 PHD_FILE: MSMg01no499_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:52 2005CHROMAT_FILE: MSMg01no499_h15.g1 PHD_FILE: MSMg01no499_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATAGGTCCAGGATCCGCGGAATTCCAGGCCAGCTTCTGTGAT
GCCATACAACTATATCTCATGAGAACAAACAAACAAACAAACAAACAAAC
AAAAATGTAAGGATATGTATTGTGGACATTCTTGGTTTCTTGGGGCTACA
TAACAAAGCAGCCCCAAGAGTCTTTGAAATTCAAAATATTATCAGCTCCT
AGTTTTGGAGGCCAGAAGTCTGAAATCCAGATATTCATCTTAAAGTCTCC
AGATGAGAAGTCTTTCTGGCCTTGTCCAGCTGCTGGTCATATCCAGGACT
CTTTATATTCCTTGGTTTACAGATGTGTCTGTCCAATTTCTGCATCTGAT
GTAACATGTTAATCTTCCAGTGTCTCTCTTCTGAGTCTCTTTCTTTCTCC
TGAAGTCATAGTCATTGAAATAGGTAGGACCCACCTTAATCTACTGTGAC
CTCATCTTTACATGTGCAAAGACCCTATTTTCCAATAAGGCCCATACTCA
TGGGATTCTAACATATGTTTTTGAAGTTCATAATAAACATTAACAGTGGG
CATGATGCAAAATAGGCAATTAAATACAGAAACATGGAGATTAGACAGAC
GCCGGAGTAGGAAATGTTAATTGGAGGTCATTGCTAACTAGCTAGTAATT
AAAGCTGTGGGTGGCATGAGATCATGAAGATCATGAAGTGGAAGAAAACA
TGGGCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCTGTGCATCAATAATTAATGACGACAGGTTCTGCAGATTTCA
GACACACACCCCCATCGTTAATTTCCCATGTTTGTAGTGCCCTTAGAGCA
ACAGATGGTATGAAGAAGCCCTGATATTTGTGCAATTATAATCATGGTCA
CTTTTTGTGAGACACATTCTGCCCTTGATTTATGAGAGATTTGAGCTTCA
AGGTTATTCAAAGGGCAGCTGCTAGAGGCATTGGTCTGTGGCCACTGTAA
GGTCTGTCTCCAGAAAGGAGGATATTTGCTGTGTAGACACAGTCTATGGG
GGTGAATGGTGACTGTGTAGATGCAGTCTAGAAAGGCTGAGCAGGAAGGG
GGGGAATCTAGAGCCCGAGGAGAGGGTGAATGGAGGAAGAAGCCAAGGTA
GTATATTAGACCAGATGTCTGTGAAGGGAGGTGGCCGGTGAAGACCACAG
GGAGCCTTGGGAGTCAGAATCCTATGGAGAGAGGGAGTTCGGGGAGTTGT
ATAACAGAGACTCGTGGTCCAGGGCAGCACTCTCAGTCTTGGAGTAGGGT
GACTCTGCATCTCTGTTCCTGTGTTGTTCAGCAAAGAGGCAGAGGCCTGA
CTACATTAGTAGGTCAGATGCTTTAGTGGGTACCAGAGAAAGATGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_h15.g1 MSMg01no499_h15.g1 CHROMAT_FILE:
MSMg01no499_h15.g1 PHD_FILE: MSMg01no499_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:52 2005
         (628 letters)



>mm_chr12_27119738_27120765
          Length = 1028

 Score = 1214 bits (628), Expect = 0.0
 Identities = 628/628 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgtgcatcaataattaatgacgacaggttctgcagatttcagacacacacccccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tcctgtgcatcaataattaatgacgacaggttctgcagatttcagacacacacccccatc 769

                                                                       
Query: 61  gttaatttcccatgtttgtagtgcccttagagcaacagatggtatgaagaagccctgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gttaatttcccatgtttgtagtgcccttagagcaacagatggtatgaagaagccctgata 709

                                                                       
Query: 121 tttgtgcaattataatcatggtcactttttgtgagacacattctgcccttgatttatgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tttgtgcaattataatcatggtcactttttgtgagacacattctgcccttgatttatgag 649

                                                                       
Query: 181 agatttgagcttcaaggttattcaaagggcagctgctagaggcattggtctgtggccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agatttgagcttcaaggttattcaaagggcagctgctagaggcattggtctgtggccact 589

                                                                       
Query: 241 gtaaggtctgtctccagaaaggaggatatttgctgtgtagacacagtctatgggggtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gtaaggtctgtctccagaaaggaggatatttgctgtgtagacacagtctatgggggtgaa 529

                                                                       
Query: 301 tggtgactgtgtagatgcagtctagaaaggctgagcaggaagggggggaatctagagccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tggtgactgtgtagatgcagtctagaaaggctgagcaggaagggggggaatctagagccc 469

                                                                       
Query: 361 gaggagagggtgaatggaggaagaagccaaggtagtatattagaccagatgtctgtgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaggagagggtgaatggaggaagaagccaaggtagtatattagaccagatgtctgtgaag 409

                                                                       
Query: 421 ggaggtggccggtgaagaccacagggagccttgggagtcagaatcctatggagagaggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggaggtggccggtgaagaccacagggagccttgggagtcagaatcctatggagagaggga 349

                                                                       
Query: 481 gttcggggagttgtataacagagactcgtggtccagggcagcactctcagtcttggagta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gttcggggagttgtataacagagactcgtggtccagggcagcactctcagtcttggagta 289

                                                                       
Query: 541 gggtgactctgcatctctgttcctgtgttgttcagcaaagaggcagaggcctgactacat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gggtgactctgcatctctgttcctgtgttgttcagcaaagaggcagaggcctgactacat 229

                                       
Query: 601 tagtaggtcagatgctttagtgggtacc 628
           ||||||||||||||||||||||||||||
Sbjct: 228 tagtaggtcagatgctttagtgggtacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)