BAC Information

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BAC

Clone NameMSMg01-499I04
Chromosome12 (Build37)
Map Location 14,147,752 - 14,148,218
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
Downstream geneAW125753, LOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499I04.T7 (MSMg01no499_i04.b1)MSMg01-499I04.TJ (MSMg01no499_i04.g1)
ACCAG575575AG575576
length730702
length of high quality
(start - end)
544 (89 - 632)617 (62 - 678)
definitionCHROMAT_FILE: MSMg01no499_i04.b1 PHD_FILE: MSMg01no499_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:54 2005CHROMAT_FILE: MSMg01no499_i04.g1 PHD_FILE: MSMg01no499_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATGATGACGTAGAAGTGGCGGGGGGTAGAGGAGTCTCTATAGTTCGAG
AATGGGCGGAATTCTCAACTGAGTCACACAGAATGGCTGAGAAGCACCTA
AAAAGTGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCTGTCAGAATAGCTAAGATTAAAAATTCAGG
TGACAGGAGATGCTGGTGAGGATGTGGAGAAGGAGGATCACTCCTCCATT
GTTGGTGGGATTGCAAGCTTGTACAACTACTCTGGAAATTGGTTTGGCAG
CTCCTCAGAAAATTGGTCATGGCTCTACCAGTTTTTTCAGCAATACCACT
CCTGGACATATACCCAGAAGGTGCTCCAACTTGTAATAAGGACACATACT
CCACTATGTTCATAGCAGTCTTATTTATAATAGTAAGAAGCTGGAAAGAA
CCTAGTTGTCCCTCAACAGAGGAATGGGTACCAAAAAATGTGGTACATTT
ACACAGTGGAGTACTACTCAGCTATTAAAAACAATGAATTTATTAAATTC
GTAGACAAATGGATGGATCTGGAGGATAGCATCCTAAGTGAGGTAACCCA
ATCACAAAAGAACACACATGATATGCACTCACTGATAAGTGGATATTAGC
TCAGAACCTCAGATTAACCAAGATACTATGTGCAAAACACATGAAACTCA
TGATGAAAGAAGACCAATGTTTTGGATACT
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCCACACTGTGTTCCAGAATAGTTGATCTAAACCTTGAACA
TGCATTTCAGCCATAGCCATATACTATTCCCATTTTCAGACCCTAAGATC
TATGAAACAAAGTTTAAATTAATAACCTACTTTGCTTTTTGAGATAGCTT
TACTCTAGAGGCAGGGATCAGGTCCACATTTGACATTCAGACAGTGCTGA
TGTGACGCAATCCAGTTAATGCAAAAGTAACAAGTCTATTATTGCAACAG
TAAATGCTGTTTTATTTATGATTTCTTCATGAAGTTATTTTGAGACCAGA
TCACAAGATCTTGTACCCGAGGCATTTTTCAAACTTACTATGATACCAAT
GATGACCTTGAACTTCTGACCCTCTTCCTTCTTTCTCCCAGTTGCTGGTA
TTAGCTTATGCCATCACACCATCCAGTTTATAATGTGCTGAGGCTTGAAC
CCCAAGCCTTTTTTTTTTTTTAATTCAGGAATGTGATTACAAACTACAGT
CCAACTAAAAGAATAAAAAATGTAAAGCAGGCCTCAATCCAATCAAGAGG
GCAGCTAGTTTTCCATATAAATTGTCTTACTTATTTATGGGTACATATTA
CAGGCCATCGTTGAAGGCCTTATCTGTTACAGGGTTCAGAAATAGATAAG
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_i04.g1 MSMg01no499_i04.g1 CHROMAT_FILE:
MSMg01no499_i04.g1 PHD_FILE: MSMg01no499_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:54 2005
         (617 letters)



>mm_chr12_14147752_14148762
          Length = 1011

 Score =  882 bits (456), Expect = 0.0
 Identities = 467/474 (98%), Gaps = 7/474 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacactgtgttccagaatagttgatctaaaccttgaacatgcatttcagccatagccata 60
           |||||||||||||||||||||||||||||||||||||||||||||||      |||||||
Sbjct: 467 cacactgtgttccagaatagttgatctaaaccttgaacatgcatttc------agccata 414

                                                                       
Query: 61  tactattcccattttcagaccctaagatctatgaaacaaagtttaaattaataacctact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tactattcccattttcagaccctaagatctatgaaacaaagtttaaattaataacctact 354

                                                                       
Query: 121 ttgctttttgagatagctttactctagaggcagggatcaggtccacatttgacattcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttgctttttgagatagctttactctagaggcagggatcaggtccacatttgacattcaga 294

                                                                       
Query: 181 cagtgctgatgtgacgcaatccagttaatgcaaaagtaacaagtctattattgcaacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cagtgctgatgtgacgcaatccagttaatgcaaaagtaacaagtctattattgcaacagt 234

                                                                       
Query: 241 aaatgctgttttatttatgatttcttcatgaagttattttgagaccagatcacaagatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aaatgctgttttatttatgatttcttcatgaagttattttgagaccagatcacaagatct 174

                                                                       
Query: 301 tgtacccgaggcatttttcaaacttactatgataccaatgatgaccttgaacttctgacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tgtacccgaggcatttttcaaacttactatgataccaatgatgaccttgaacttctgacc 114

                                                                       
Query: 361 ctcttccttctttctcccagttgctggtattagcttatgccatcacaccatccagtttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ctcttccttctttctcccagttgctggtattagcttatgccatcacaccatccagtttat 54

                                                                 
Query: 421 aatgtgctgaggcttgaaccccaagcctttttttttttttaattcaggaatgtg 474
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 53  aatgtgctgaggcttgaaccccaagcc-ttttttttttttaattcaggaatgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1011
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1001
Effective search space:   607607
Effective search space used:   607607
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)