Query= MSMg01no499_l11.b1 MSMg01no499_l11.b1 CHROMAT_FILE:
MSMg01no499_l11.b1 PHD_FILE: MSMg01no499_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:10 2005
(382 letters)
>mm_chr12_113151957_113152737
Length = 781
Score = 669 bits (346), Expect = 0.0
Identities = 367/374 (98%), Gaps = 1/374 (0%)
Strand = Plus / Plus
Query: 1 cagctttgatattttccagcgttacagttcaggcctctccttcttcgtccagcatgagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagctttgatattttccagcgttacagttcaggcctctccttcttcgtccagcatgagtc 260
Query: 61 tgcaccaaatctgtagtcctaccctcacttcatcaggagctagcctgggcatggccccac 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tgcaccaaatctgcagtcctaccctcacttcatcaggagctagcctgggcatggtcccac 320
Query: 121 cacagccactccactctctctacccaggcttcctagcctgggcattcccccccaccccac 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 321 cacagccactccactctctctacccaggcttcctagcctgggcatgccccccc-ccccac 379
Query: 181 ggccgtttcatgagggcttcctcccctttcccctcagcactcacctctgacttccagttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggccgtttcatgagggcttcctcccctttcccctcagcactcacctctgacttccagttt 439
Query: 241 aacctccctgtaccagaagtgggctcctaaacaggaaaccaaacccagcactgtaagttg 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 aacctccctgtaccagaagtgggctcctaaacaggaaaccaaacacagcactgtaagttg 499
Query: 301 taaagcctgagcagctgccacagccctgatatggatggggaggggctaggagaacaaagc 360
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 500 taaagcctgagcagctgccacagtcctgagatggatggggaggggctaggagaacaaagc 559
Query: 361 tcttcaaaccctgg 374
||||||||||||||
Sbjct: 560 tcttcaaaccctgg 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 781
Length adjustment: 9
Effective length of query: 373
Effective length of database: 772
Effective search space: 287956
Effective search space used: 287956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_l11.g1 MSMg01no499_l11.g1 CHROMAT_FILE:
MSMg01no499_l11.g1 PHD_FILE: MSMg01no499_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:10 2005
(575 letters)
>mm_chr12_113280029_113281003
Length = 975
Score = 1073 bits (555), Expect = 0.0
Identities = 570/575 (99%)
Strand = Plus / Minus
Query: 1 aaagcctggggcagaaggaaaagcactctgaaacaggttcataaatggagaaaaacctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 aaagcctggggcagaaggaaaagcactctgaaacaggttcataaatggagaaaaacctaa 814
Query: 61 tgataacttctcctgaaatgtgactttccagaaagctaaataaacatggcttcatttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tgataacttctcctgaaatgtgactttccagaaagctaaataaacatggcttcatttctt 754
Query: 121 tttttttttaatttttaaatgtatgtatgtatttgttttgcagagtctcactatggcggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tttttttttaatttttaaatgtatgtatgtatttgttttgcagagtctcactatggcggc 694
Query: 181 tggcttggaactcactatgcagtccaggctgcccagctcaggtgatctgtatttccctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tggcttggaactcactatgcagtccaggctgcccagctcaggtgatctgtatttccctct 634
Query: 241 gccacttatttttaggatgacagtgtgtgtcagcgtcccagactgccttcctttgtcatc 300
||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gccacccagtgctaggatgacagtgtgtgtcagcgtcccagactgccttcctttgtcatc 574
Query: 301 cactgcattattttaaagtgaatttaagtgtgctctttgggaaggagtatgcaagtctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cactgcattattttaaagtgaatttaagtgtgctctttgggaaggagtatgcaagtctac 514
Query: 361 accgagtgccaacagcctgagctaagagcataagaggaggctgcagtggtctgagtgaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 accgagtgccaacagcctgagctaagagcataagaggaggctgcagtggtctgagtgaga 454
Query: 421 atggaaccccaggctgcagtggcctgagtatttgcatgcttgatcatcatggagtgcaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atggaaccccaggctgcagtggcctgagtatttgcatgcttgatcatcatggagtgcaac 394
Query: 481 tctttttgaaaggtttggggaagatttctaatcttgtgtggtcttgttagaggaagtggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tctttttgaaaggtttggggaagatttctaatcttgtgtggtcttgttagaggaagtggg 334
Query: 541 gtttcaaaagctcacaccagactccctctgcctac 575
|||||||||||||||||||||||||||||||||||
Sbjct: 333 gtttcaaaagctcacaccagactccctctgcctac 299
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
