Query= MSMg01no500_c19.b1 MSMg01no500_c19.b1 CHROMAT_FILE:
MSMg01no500_c19.b1 PHD_FILE: MSMg01no500_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:46 2005
(617 letters)
>mm_chr12_52766189_52767205
Length = 1017
Score = 1023 bits (529), Expect = 0.0
Identities = 532/533 (99%)
Strand = Plus / Minus
Query: 85 taatcccagtccttgggaggcagaggcagccggatctctgttagttcaaggccaaaatgg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1017 taatcccagtccttgggaggcagaggcagccggatctctgttagttcaaggccaacatgg 958
Query: 145 tctacagagcaagttccaggactgcaagggctccattatacagagaaaccttgtctctat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tctacagagcaagttccaggactgcaagggctccattatacagagaaaccttgtctctat 898
Query: 205 aaacctaacaacaacaacgttatacaaggttgggcatgctgatgtacacctttaattctg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 aaacctaacaacaacaacgttatacaaggttgggcatgctgatgtacacctttaattctg 838
Query: 265 tgagtattctgtgagtttgaggccagccagactggttagatagagttcttgaccaggcag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tgagtattctgtgagtttgaggccagccagactggttagatagagttcttgaccaggcag 778
Query: 325 ggttataatagcccttcaaagaaagctacaaattgtatgtacataaggtgcataaaacat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ggttataatagcccttcaaagaaagctacaaattgtatgtacataaggtgcataaaacat 718
Query: 385 aattgtagattactttgggtggcattgacatttttaactattaaagttgtgttgcatgga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aattgtagattactttgggtggcattgacatttttaactattaaagttgtgttgcatgga 658
Query: 445 cacagaatgtgcttatatcctctgtaataccattcaccagtgaaagtgcaaatcttttgt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cacagaatgtgcttatatcctctgtaataccattcaccagtgaaagtgcaaatcttttgt 598
Query: 505 atccttgattaattcctacatattttatcctttaaaaaaagtactttgtgggctggagag 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atccttgattaattcctacatattttatcctttaaaaaaagtactttgtgggctggagag 538
Query: 565 gtggctcagcggttaagagtgctgactgctcttccagaggtcctgaattcaat 617
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gtggctcagcggttaagagtgctgactgctcttccagaggtcctgaattcaat 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_c19.g1 MSMg01no500_c19.g1 CHROMAT_FILE:
MSMg01no500_c19.g1 PHD_FILE: MSMg01no500_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:46 2005
(562 letters)
>mm_chr12_52696583_52697547
Length = 965
Score = 963 bits (498), Expect = 0.0
Identities = 548/568 (96%), Gaps = 9/568 (1%)
Strand = Plus / Plus
Query: 1 acatgtgtttgtgaattacctcacagtgctatgaactgaacttggggcttctggaagagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgtgtttgtgaattacctcacagtgctatgaactgaacttggggcttctggaagagc 260
Query: 61 agccagctctcttaaacaccgagcaattcctccagcccagcattagtgcgcgatggccac 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 agccagctctcttaaacaccgagccattcctccagcccagcattagtgcgcgatggccac 320
Query: 121 atttctataattctaaaatattcctcatcgtgtcatatatagtagggttttttatactac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttctataattctaaaatattcctcatcgtgtcatatatagtagggttttttatactac 380
Query: 181 acaccctgtcgttttaactttcaccacaagtcttacagtagacacagcctttttctggtt 240
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 acaccctgtcgttttaacttccaccacaagtcttacagtagacacagccttgttctggtt 440
Query: 241 tccacatgagactgaactcagggttgtcaaatatcttgctgatgtcactctggtaatcca 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcacatgagactgaactcagggttgtcaaatatcttgctgatgtcactctggtaatcca 500
Query: 301 ------tgccatcctacagtagaggcaggagtatgattcttttttttaaatacaggtaaa 354
||||||||||||||||||||||| |||||||||||||||| |||||||||| ||
Sbjct: 501 ataccatgccatcctacagtagaggcagg-gtatgattcttttttt-aaatacaggtcaa 558
Query: 355 gggcacatgcagttaactactttaagaaatttcatgcctctttattaagtctgaatctct 414
||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 559 gggcacatgtggttaact-ctttaagaaatttcatgcctctttattaagtctgaacctct 617
Query: 415 gaaatgtaggaaacaggatatcagtatattcttatcatcccttttaaaaagtttgacaat 474
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 618 gaaatgtaggaaacaggatatcagtgtattcttatcaccccttttaaaaagtttgacaat 677
Query: 475 acaaagtcattttcccagacatagttggttctgtgtaagcaggtcttcaagggccagcag 534
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 678 acaaagtcattttcccagacatacttggttctgtgtaagcaggtcttcaagggccagcag 737
Query: 535 caagcatccttaggcaactaacttcgcc 562
||||||||||||||||||||||||||||
Sbjct: 738 caagcatccttaggcaactaacttcgcc 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 965
Length adjustment: 10
Effective length of query: 552
Effective length of database: 955
Effective search space: 527160
Effective search space used: 527160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
