BAC Information

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BAC

Clone NameMSMg01-500J11
Chromosome12 (Build37)
Map Location 116,635,684 - 116,636,248
singlet/doubletsinglet
Overlap geneIgh
Upstream geneEG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544
Downstream geneEG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500J11.T7 (MSMg01no500_j11.b1)MSMg01-500J11.TJ (MSMg01no500_j11.g1)
ACCAG576395AG576396
length776731
length of high quality
(start - end)
55 (42 - 96)565 (72 - 636)
definitionCHROMAT_FILE: MSMg01no500_j11.b1 PHD_FILE: MSMg01no500_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:15 2005CHROMAT_FILE: MSMg01no500_j11.g1 PHD_FILE: MSMg01no500_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXATATTCCAACATCCGCGGAATT
CTAAAATTTTCCCCTAAAAAAATATGGCCATTATTATGGAACTAGAGGCA
GGCAGAAACTGGATTAATTTAATGACATCATGACAATTTAANGGNAGTAA
GTAGACTTGATATGATGACACACCCGCCATTTTTTTATTTAATTTTGANN
NATAANGATTGTATGACATGTGGGACAAGGGGGAAGGCCCGGGACTTTGC
CCATAATTCCACGATTTCAAATTATATCCAGACGACCCCCTAAAAAAATG
GTTTTAGAACAAATTGTTGTTATCCCAACCCCCGNNNNNNNNNNAAAAAA
ATCCAGCCTCCGGGCTACCCCGCCCTTATTGAAAAANNNNNNNNNNNNNN
NTNNTNTTTNTNTTTNNNCNNCCTTTTTTTCCCNNTTNCTTTTTTCCCTC
CTNCTCTCCCTCCCTTTTCCCTCCTTTCTNGGGGGGAGAAAGGTCTGGGG
AGGGGGGGGCGGAGAAGGGAGGGNTTCCCTNTNNNNATTNNNNNNNNNNN
NTGTAATAGTANTTTTCTNNNNNNNTTTNTTTTTTTTTTATATTTTAAAC
CTGGTGGGTGTCCANTTTTTNNTTTTTNATATATTNNNTTTTTAATTTTT
TTTTTNTTTTATTTATTNTTTTTTTTTTATNATTTTAAGTTAGGGGAGGT
TTTTCTTNNNTTNTATTTTTTTTTATTTATTTTTAAAATTTTTTTNATNT
NGGTTGTTGGTGTGTTGTTTGGGAGG
CATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGTATTGAGTAGTTGGTATGGAAAGAAC
TATGTATTCTCTGTGATTGTCTTTTTTGAGTCTATTAACTTGACTTGTAC
CTGTTGTGATTCAGATATAATGATTTTTTTTCAAACTCAGTGAAGATTCC
TTGTTAAGCTCTTCAAGAAATTATATTTTCTGTTTATTTGATTTTGTATA
TTTTTGAAAAAAAAGTAATAAATGTATTCACATAACTGAATCCCTCCCCA
AATTTATGACATCTATTTTCTCATAAAATCAACTATACAGCTTTTTATTC
TCTCTGGAAAAAGGAAAATATGGAATGAAAATTAAAGAGGGATTAAAAAC
ATTTCAATAAACTAGAAATATACACATGTGCGCACACACACAAAGAGACA
CACTCAAACACAAATGAAAACCCATAAAACTATACCTTTGCAAACATAAT
ATGTAGACAAATAACAAGTTGAAAAACCACACAAACTGATATGAGAATAG
ATATCTACAACAATATTGTTGAGTTCATTTTGTGTTGGCCTTCTTTTGTA
GGACATGTGTCTATCCTTAAGCATGGTTAGTAAATCCAATAATTCTTCAT
TGGAGAAAGCTAATTTTTCCTTTGCATGTGANGGTCAATTTCAGAAACTT
CTTGTTTAAAGGTGAGAACTTGTGGCCGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_j11.g1 MSMg01no500_j11.g1 CHROMAT_FILE:
MSMg01no500_j11.g1 PHD_FILE: MSMg01no500_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:15 2005
         (565 letters)



>mm_chr12_116635484_116636448
          Length = 965

 Score =  994 bits (514), Expect = 0.0
 Identities = 553/566 (97%), Gaps = 2/566 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtattgagtagttggtatggaaagaactatgtattctctgtgattgtcttttttgagt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtattgaatagttggtatggaaagaactatgtattctctgtgattgtcttttttgagt 260

                                                                       
Query: 61  ctattaacttgacttgtacctgttgtgattcagatataatgattttttttcaaactcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ctattaacttgacttgtacctgttgtgattcagatataatgattttttttcaaactctgt 320

                                                                       
Query: 121 gaagattccttgttaagctcttcaagaaattatattttctgtttatttgattttgtatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagattccttgttaagctcttcaagaaattatattttctgtttatttgattttgtatat 380

                                                                       
Query: 181 ttttgaaaaaaaagtaataaa-tgtattcacataactgaatccctccccaaatttatgac 239
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgaaaaaaa-gtaataaaatgtattcacataactgaatccctccccaaatttatgac 439

                                                                       
Query: 240 atctattttctcataaaatcaactatacagctttttattctctctggaaaaaggaaaata 299
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 440 atctattttctcataaaatcaactatacaactttttattctcgctggaaaaaggaaaata 499

                                                                       
Query: 300 tggaatgaaaattaaagagggattaaaaacatttcaataaactagaaatatacacatgtg 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 500 tggaatgaaaattaaagagggattaaaaacatttcaataaactagaaatatacacatgcg 559

                                                                       
Query: 360 cgcacacacacaaagagacacactcaaacacaaatgaaaacccataaaactatacctttg 419
           | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 cacacacacacaaagagacacactcaaacaaaaatgaaaacccataaaactatacctttg 619

                                                                       
Query: 420 caaacataatatgtagacaaataacaagttgaaaaaccacacaaactgatatgagaatag 479
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caaacataatatgtagacaaacaacaagttgaaaaaccacacaaactgatatgagaatag 679

                                                                       
Query: 480 atatctacaacaatattgttgagttcattttgtgttggccttcttttgtaggacatgtgt 539
           ||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||
Sbjct: 680 atatctacaacaatattgttgagttcattttgtgttggccttcctttgcgggacatgtgt 739

                                     
Query: 540 ctatccttaagcatggttagtaaatc 565
           ||||||||||||||||||||||||||
Sbjct: 740 ctatccttaagcatggttagtaaatc 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)