BAC Information

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BAC

Clone NameMSMg01-501L07
Chromosome12 (Build37)
Map Location 10,382,171 - 10,382,660
singlet/doubletsinglet
Overlap geneNt5c1b
Upstream geneLOC633030, LOC100042238, Osr1, LOC382567
Downstream geneRdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501L07.T7 (MSMg01no501_l07.b1)MSMg01-501L07.TJ (MSMg01no501_l07.g1)
ACCAG577237AG577238
length717701
length of high quality
(start - end)		542 (64 - 605)245 (63 - 307)
definitionCHROMAT_FILE: MSMg01no501_l07.b1 PHD_FILE: MSMg01no501_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:35 2005CHROMAT_FILE: MSMg01no501_l07.g1 PHD_FILE: MSMg01no501_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCACATTTTCAGAAATGGGCGGAATTCCATCATT
TTTTCAGGCATGGTCTTTCTACTACTCAGGACCATGAACTCCTTATTATT
TCCTACCTAATTCTGTTTGGAGGAAACAGGCTTTTGTTTAAAGACCAGGT
GACTAGGGCTCCATTGAAGAAAGCCACGATTCATAATGGCAGATTCAGGA
TGAAAAATCCTTTTCTCAACAATTCCAGATATCTTTGGGACTTGGTCAGC
TGGAATGGGGCAAGAATTAGAAAGATGGTGTAGGGGTTATTGAGGAGAAC
GGGTAAACTTTTTTTGTCCATCTGGGTCCTTTTTCTTCTTATGCAGAGTC
CCTGATGGGAGTGAACGGCAGTTCACACAGTACCTTGACAAACCGGAACG
CTGGCCCTGGCGTCAGGATGACGTTCTCGTTGGTGAGCTGATACTCCATG
TACTTCTCCAGACCTTCCTCTTCGTAGATTTTCCTGTCATCTACCATATT
GAAAAGTGCCCGAGAAGAGACGGCAATGGTGATGGCATGCTTGGGTTTGG
GCTGTGGAAGTCAAGGAAAGGAAAGTCAACACATATAGATAAGGGTAGGG
ATGCAGCTGAGACAGGATAGAGGACTAAGGTGGTAAGGCTGAGAAGGACT
TCTCTACACTATAAATGGGATGGAGTTGAGGGACAGGCAGAAGGGAGTCT
AGGGGTGCCCGAAGCCA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAC
AGAAAAATAGTTTCCCAGAATATGGATCTCACCGATTTAGTTAGATTAGT
TGACCATGAACCCCTGAATGTATCTTTCCCTTCCCACAGGACTGGTGTTA
GAGATATACACTATGATTAGCATTTACATACGTGCTGGGGACATAAATGT
AGGGCTCAGTGCTTGTGTGCCACACTGAACAGACAACATTCCTAGTTCAT
TTAAACAAGTAATGTTTTTAATGTATTTATTTTTATCTTATATGTATAAG
TGTTTTGCCATCATACACACACACACACATACACACATATATATGTATGG
ATATATATATATATATATATATATATATATATATATATATATATATATAT
ATACATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGT
GTGTGTGTCTTTCTCTCTGCATATATATAAAAAAAAATATATATATGTAT
GTATATATGTGTGCGTGTGTGTTTGTTTGTTGTTAGACAGACAGAGAGAC
ACACACACATAGAGAGAGAGAGTGAGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTCTCTCTGTATGTCTATATATATATATATAGATACAGAGACACATT
TTTCTTCTTTCATACACAGACACACATACACAGAGAGAGTGAGAGATATA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_l07.b1 MSMg01no501_l07.b1 CHROMAT_FILE:
MSMg01no501_l07.b1 PHD_FILE: MSMg01no501_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:35 2005
         (542 letters)



>mm_chr12_10381719_10382660
          Length = 942

 Score =  901 bits (466), Expect = 0.0
 Identities = 483/496 (97%), Gaps = 13/496 (2%)
 Strand = Plus / Minus

                                                                       
Query: 54  ttggaggaaacaggcttttgtttaaagaccaggtgactagggctccattgaagaaagcca 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 ttggaggaaacaggcttttgtttaaagaccaggtgactagggctccattgaagaaagcca 883

                                                                       
Query: 114 cgattcataatggcagattcaggatgaaaaatccttttctcaacaattccagatatcttt 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 cgattcataatggcagattcaggatgaaaaatccttttctcaacaattccagatatcttt 823

                                                                       
Query: 174 gggacttggtcagctggaatggggcaagaattagaaagatggtgtaggggttattgagga 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gggacttggtcagctggaatggggcaagaattagaaagatggtgtaggggttattgagga 763

                                                                       
Query: 234 gaacgggtaaacttttttt-------gtccatctgggtcctttttcttcttatgcagagt 286
           ||||||||||||      |       ||||||||||||||||||||||||||||||||||
Sbjct: 762 gaacgggtaaac------tcccaaaggtccatctgggtcctttttcttcttatgcagagt 709

                                                                       
Query: 287 ccctgatgggagtgaacggcagttcacacagtaccttgacaaaccggaacgctggccctg 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ccctgatgggagtgaacggcagttcacacagtaccttgacaaaccggaacgctggccctg 649

                                                                       
Query: 347 gcgtcaggatgacgttctcgttggtgagctgatactccatgtacttctccagaccttcct 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gcgtcaggatgacgttctcgttggtgagctgatactccatgtacttctccagaccttcct 589

                                                                       
Query: 407 cttcgtagattttcctgtcatctaccatattgaaaagtgcccgagaagagacggcaatgg 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cttcgtagattttcctgtcatctaccatattgaaaagtgcccgagaagagacggcaatgg 529

                                                                       
Query: 467 tgatggcatgcttgggtttgggctgtggaagtcaaggaaaggaaagtcaacacatataga 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgatggcatgcttgggtttgggctgtggaagtcaaggaaaggaaagtcaacacatataga 469

                           
Query: 527 taagggtagggatgca 542
           ||||||||||||||||
Sbjct: 468 taagggtagggatgca 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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