BAC Information

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BAC

Clone NameMSMg01-505M07
Chromosome12 (Build37)12 (Build37)
Map Location 89,238,061 - 89,238,58889,280,678 - 89,281,042
singlet/doubletsingletsinglet
Overlap geneLOC100039191
Upstream gene2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039203, LOC627873
Downstream geneLOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505M07.T7 (MSMg01no505_m07.b1)MSMg01-505M07.TJ (MSMg01no505_m07.g1)
ACCAG580326AG580327
length738748
length of high quality
(start - end)
648 (73 - 720)365 (334 - 698)
definitionCHROMAT_FILE: MSMg01no505_m07.b1 PHD_FILE: MSMg01no505_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:45 2005CHROMAT_FILE: MSMg01no505_m07.g1 PHD_FILE: MSMg01no505_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:45 2005
singlet/doubletsingletsinglet
BLAST hitpluralplural
Map location.(89,238,061 - 89,238,588)(89,280,678 - 89,281,042)
sequence
GGGGGGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTGTTTTCCTCATGCACAGCTGATGTTTGCTGGGTTAT
TTGGACCACAGACCGTAAGTCATCACAATAAATTTCATCAATATAGAGTT
ACATCATTTCTGAGTCTAGAGAACCCTGACTAAGAGACACATTATTTTAC
CATTGTCCTCAGTAGTCTCTTTTGTCTTTCATTATCATAGAAACGAAGTC
TATCTCAAGACTTGTCCTTTAGTTTGTTTTGTTGGTGTGATGTGATTATT
CTTGGTACAGGGAGTAGTACTATTTATCATGAAGTGTGGCCTTGTTAGAG
GAAGTGTGTCACTGTCAATATGAGACTTTGAGGAAATCTATATATACAGA
AGCTCTGCCCAGGGTGAGACACAGTAGTCTCTCCTTGCTGCCTTTGAACT
GAGGTACAGAACTCTCAGCTCCTTCTCCAGCACCATGGATGCTGCTATGA
TGAAAATGAACTGAATCTCTGAAAGTGTAAGCTAGCTGCAACTAAATATT
TTCCTTTATCAAAGTTGCCTTGGGGTGTGGGAGCAAGCAGGCTCTGGGGA
GTAAGTGGTGACCTAAGTGAGTAGGGCCTGGGAGCAAGCAGGGACAGGAA
TGAGTGGGACCCAGAATGAGCAGAGGCTGGAGTGAGGAGAAATGAAGTGA
AAAATAAAAGTAAAAGTTGGTTTGGTTGTGCTATCTTN
NGGGGCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGGACTTGTGAAT
TCAAGCCAGAGTCGATGATCAGTGAGATCAGCTGTGACTTCATGCAGGAG
CTGTGTTGAGGGGAAGTCTAGAAGACAGCAGCATCCCTCTGGCCAACAGG
CTCTGCTATGAAAATATCACCAAACTGCAACATGGGAAAAGCTAGAGGCA
AGGGGCTTATCAGTAAGGTTGTTTTATGTATCCCATGAAACTTTTATAGG
ATAGTAAGCCAACTGTTTATCAAAATTTTTTTAGATGTTAGAACTCTCAA
ACTGTTATCATGATATTAAGTCATTTCTCATGGATATTGAATCCAAACTT
TCTCAAATTGTGCATTGAAGAAGGTTTTATTTGCCATTTGAGAAATAAAA
CCCAATTCCCCAAATTTAAGTTTCAATTAAAATTTATTTTAATTATTCAG
AGCTTGTGTGAATTACTTTTGCCATTGTCTTATTTTTCATCAGTGACTTT
ATCATGACTAACATAAGAGAAGAACCAAAATGTTAATCTATTTTATACAT
GCTTATGGACAAATGGGCTTTCCCGAACTCTAGAAAGTCAGAAGCAAACA
CATTATTTAGGAAAATCTGAGCATTAACTTAGCATGTAAGAAAGCAAGGT
CATGGNTTTTTTTTTTTCGTTTTATTATATTTAATCTTGTTTTTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_m07.b1 MSMg01no505_m07.b1 CHROMAT_FILE:
MSMg01no505_m07.b1 PHD_FILE: MSMg01no505_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:45 2005
         (648 letters)



>mm_chr12_89238061_89239108
          Length = 1048

 Score =  982 bits (508), Expect = 0.0
 Identities = 523/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcacagctgatgtttgctgggttatttggaccacagaccgtaagtcatcacaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 catgcacagctgatgtttgctgggttatttggaccacagaccgtaagtcatcacaataaa 469

                                                                       
Query: 61  tttcatcaatatagagttacatcatttctgagtctagagaaccctgactaagagacacat 120
           ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 468 tttcatcaatataaagttacatcatttctgagtctagagaatcctgactaagagacacat 409

                                                                       
Query: 121 tattttaccattgtcctcagtagtctcttttgtctttcattatcatagaaacgaagtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tattttaccattgtcctcagtagtctcttttgtctttcattatcatagaaacgaagtcta 349

                                                                       
Query: 181 tctcaagacttgtcctttagtttgttttgttggtgtgatgtgattattcttggtacaggg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 348 tctcaagacttgtcctttagtttgttttgttggtgtgatgtgataattcttggtacaggg 289

                                                                       
Query: 241 agtagtactatttatcatgaagtgtggccttgttagaggaagtgtgtcactgtcaatatg 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 288 ggtagtactatttatcatgaagtgtggccttgttagaggaagtgtgtcactgtgaatatg 229

                                                                       
Query: 301 agactttgaggaaatctatatatacagaagctctgcccagggtgagacacagtagtctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 agactttgaggaaatctatatatacagaagctctgcccagggtgagacacagtagtctct 169

                                                                       
Query: 361 ccttgctgcctttgaactgaggtacagaactctcagctccttctccagcaccatggatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ccttgctgcctttgaactgaggtacagaactctcagctccttctccagcaccatggatgc 109

                                                                       
Query: 421 tgctatgatgaaaatgaactgaatctctgaaagtgtaagctagctgcaactaaatatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tgctatgatgaaaatgaactgaatctctgaaagtgtaagctagctgcaactaaatatttt 49

                                                           
Query: 481 cctttatcaaagttgccttggggtgtgggagcaagcaggctctgggga 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  cctttatcaaagttgccttggggtgtgggagcaagcaggctctgggga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no505_m07.g1 MSMg01no505_m07.g1 CHROMAT_FILE:
MSMg01no505_m07.g1 PHD_FILE: MSMg01no505_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:45 2005
         (365 letters)



>mm_chr12_89280314_89281078
          Length = 765

 Score =  683 bits (353), Expect = 0.0
 Identities = 362/365 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgttagaactctcaaactgttatcatgatattaagtcatttctcatggatattgaatc 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gatgttagaactctcgaactgttatcatgatattaagtcatttctcatggatattgaatc 670

                                                                       
Query: 61  caaactttctcaaattgtgcattgaagaaggttttatttgccatttgagaaataaaaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 caaactttctcaaattgtgcattgaagaaggttttatttgccatttgagaaataaaaccc 610

                                                                       
Query: 121 aattccccaaatttaagtttcaattaaaatttattttaattattcagagcttgtgtgaat 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aattccccaaatttaagttttaattaaaatttattttaattattcagagcttgtgtgaat 550

                                                                       
Query: 181 tacttttgccattgtcttatttttcatcagtgactttatcatgactaacataagagaaga 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 549 tacttttgccattgtcttatttttcatcagtgactttgtcatgactaacataagagaaga 490

                                                                       
Query: 241 accaaaatgttaatctattttatacatgcttatggacaaatgggctttcccgaactctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 accaaaatgttaatctattttatacatgcttatggacaaatgggctttcccgaactctag 430

                                                                       
Query: 301 aaagtcagaagcaaacacattatttaggaaaatctgagcattaacttagcatgtaagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaagtcagaagcaaacacattatttaggaaaatctgagcattaacttagcatgtaagaaa 370

                
Query: 361 gcaag 365
           |||||
Sbjct: 369 gcaag 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)