BAC Information

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BAC

Clone NameMSMg01-509F05
Chromosome12 (Build37)
Map Location 31,912,299 - 31,912,854
singlet/doubletsinglet
Overlap geneLOC100043065
Upstream geneSntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781
Downstream geneLOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509F05.T7 (MSMg01no509_f05.b1)MSMg01-509F05.TJ (MSMg01no509_f05.g1)
ACCAG583029AG583030
length755773
length of high quality
(start - end)
620 (48 - 667)559 (80 - 638)
definitionCHROMAT_FILE: MSMg01no509_f05.b1 PHD_FILE: MSMg01no509_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:32 2005CHROMAT_FILE: MSMg01no509_f05.g1 PHD_FILE: MSMg01no509_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGC
GGAATTCTTTATTTCACTCTGTACTCCATTTTTAATGGGGTTATTTGAAT
TTCTGGAGTTCAACTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCC
CTATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCT
TTGTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTTA
TGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTTAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCTAC
TTTCTCCTCTATTAATTTCAGTGTCTCTGGTTTTATGTGGAGGTCTTTGA
TCCACTTAGACTTGAGCTTAGTACAAGGAGATAGGAATGGATCAATTCAC
ATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAAT
GCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGT
GACCATAGGTATGTGGATTCATTTCTGGGTCTTCAATTCTATTCCATTGA
TCTACCTGTCTGTCATTGTACCAGTACCATGCAGTTTTTATCACAATTGC
TCTGTAGTACAGCTTAAAGTCAGGTTTATCTTTCATCTAAGGGTTTCAGA
GCATCAGGTCTTATGTTGAAGTCCTTGATCCAGTTGCCGCAGAGTTTAAT
GAAGG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACCTGAGGGTGCTACATAG
TGAGAGCCTGTCTCAAGACAAACAAAAATAAATGGTAAGATAAATAAAAA
AGAAACCCAAAATGTCAAAGGATGTTGCTGTTAGCAAGGTCTGTATAGCA
AAAGGACTCTGACCCACAGAATCTCAACTCATCAGAACAGCCAGACGCCT
TTACTTTTTGTTTAACTAAGGAAGCAGGGTGGATTAACTCCGTTCAACCT
CTAACTTGCATCCGTGTCTCCTATTTTCCACAATTATATTAACTTTAAAA
ACTGTCTTTTTATTAGTTTTAAAGTCAGTTACACAGGACTGGGTGTCATC
ATACATGTGCCATACATGGTTCGCATACACATGTGCCATTCTGTTCACAT
ATTCCTCTGTTCACATCTGTTCTCTTCCCCACTGCCAGACCTCCCTTGTA
CCCTTGTTTCCCTTCTTTTACAGACAGTCTCCTCTTCTGTCTTCTTATTT
CATATAGGAGCTGGTGAGCCAGCCAGCCTGACATAGGCACGTGCAAACAA
CAACAAAAAAGACACTCAGTCTTAAACCAGGTGGGAGAGAAGGACCAAGC
TTTAAGGCTGTCCTCTGACCTCTATGCATTCCAGAGCACGTGTGCCCCTG
CACTTGCAACACATGCATACACATAGGGAAAGAATGGAAAATCACACCCC
ACCCCAACCACTTGTTAAATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_f05.g1 MSMg01no509_f05.g1 CHROMAT_FILE:
MSMg01no509_f05.g1 PHD_FILE: MSMg01no509_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:32 2005
         (559 letters)



>mm_chr12_31912051_31913010
          Length = 960

 Score = 1029 bits (532), Expect = 0.0
 Identities = 550/556 (98%), Gaps = 1/556 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacctgagggtgctacatagtgagagcctgtctcaagacaaacaaaaataaatggtaag 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgacctgcgggtgctacatagtgagagcctgtctcaagacaaacaaaaataaatggtaag 745

                                                                       
Query: 61  ataaat-aaaaaagaaacccaaaatgtcaaaggatgttgctgttagcaaggtctgtatag 119
           |||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 744 ataaataaaaaaagaaacccaaaatgtcaaaggatgctgctgttagcacggtctgtatag 685

                                                                       
Query: 120 caaaaggactctgacccacagaatctcaactcatcagaacagccagacgcctttactttt 179
           ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 684 caagaggactctgacccacagaatctcaactcatcagaacagccagactcctttactttt 625

                                                                       
Query: 180 tgtttaactaaggaagcagggtggattaactccgttcaacctctaacttgcatccgtgtc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtttaactaaggaagcagggtggattaactccgttcaacctctaacttgcatccgtgtc 565

                                                                       
Query: 240 tcctattttccacaattatattaactttaaaaactgtctttttattagttttaaagtcag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcctattttccacaattatattaactttaaaaactgtctttttattagttttaaagtcag 505

                                                                       
Query: 300 ttacacaggactgggtgtcatcatacatgtgccatacatggttcgcatacacatgtgcca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttacacaggactgggtgtcatcatacatgtgccatacatggttcgcatacacatgtgcca 445

                                                                       
Query: 360 ttctgttcacatattcctctgttcacatctgttctcttccccactgccagacctcccttg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttctgttcacatattcctctgttcacatctgttctcttccccactgccagacctcccttg 385

                                                                       
Query: 420 tacccttgtttcccttcttttacagacagtctcctcttctgtcttcttatttcatatagg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacccttgtttcccttcttttacagacagtctcctcttctgtcttcttatttcatatagg 325

                                                                       
Query: 480 agctggtgagccagccagcctgacataggcacgtgcaaacaacaacaaaaaagacactca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctggtgagccagccagcctgacataggcacgtgcaaacaacaacaaaaaagacactca 265

                           
Query: 540 gtcttaaaccaggtgg 555
           ||||||||||||||||
Sbjct: 264 gtcttaaaccaggtgg 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 960
Length adjustment: 10
Effective length of query: 549
Effective length of database: 950
Effective search space:   521550
Effective search space used:   521550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)