BAC Information

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BAC

Clone NameMSMg01-509L04
Chromosome12 (Build37)
Map Location 75,543,685 - 75,543,962
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneKcnh5, Rhoj, Gphb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509L04.T7 (MSMg01no509_l04.b1)MSMg01-509L04.TJ (MSMg01no509_l04.g1)
ACCAG583313AG583314
length7531,157
length of high quality
(start - end)
278 (85 - 362)---
definitionCHROMAT_FILE: MSMg01no509_l04.b1 PHD_FILE: MSMg01no509_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:01 2005CHROMAT_FILE: MSMg01no509_l04.g1 PHD_FILE: MSMg01no509_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCTATAATTTGCGGCCGCGAAACGAATCACAATTCGAAACTGGGGNG
CGGAANNCNANACNGTGCAAAAAAGGGGACGANACCCAACAGGGTTTCAG
ATTTCTGTGCTCTTTTATTATACTATGACTCCATGAGACTTCACAGTTCT
ATTGGGTAGTTGTTGAAAATGTGATGATATTGTATCCATGGAAAACTAGA
CACAAAACAATGAGAGGCTCAGGACACAAGAGGAACAGTGGAAGAGAAGA
GGATTATTCACCATGCTTCACTATGTTGTTGTGTGGACTGTCCATACACA
GCATTAAAACTGATGATGTTGNGTATTTATACATTCACTTTAAGTGCTCA
CAGAGGAGGAGAAGACCTGTCAAAATAGAAGTCAATAGAAAGGGTATACA
ATATCTAAAATGAAAAACACATGATAATTGGACATACAGAAATAACCAAC
CAACCAGCCAGCCAAGAAAAAAACAAAGACCAACATACAATGTTGAAAGC
TGTTGTCTTTCCAGTTGGAATCAAGTGTACAGGGTGAGGACAACGGTTTT
TCATTCTCAGTGTGATTTCTATGCCTTACAGTGCTTTGGCTTTCTTGACC
CATGTGGATTAATTACTCTCATTAGTTTTAATTGCAAAGTTAGCCAGAAA
AATTGAAAGAAGTTGATATAACACAAAAGCAGATAAGCACCAAAAATGCC
AACAATAACTCATAGTTTATGGGACTTAGAAATTATGCTGCCAGTGAAGA
AAT
CCCTATTTCTATCGCCGTCACTNCCGGATGTGAGAGGGTTTTTCTTCTAG
CTACAAAAAGAGAGAGAGAGAGGGTATATGTATCCAATATTAACGAGGGT
GGGGGATGTNAGCTCCACTATAACATCTACCGCGCGGTATTAGGAGAACT
ACGCGGCGGCGTGATGTCCCTAATACAACAGAAACGCGCGCGCTTGTAAC
GCCGCACGAAGAGTCACACCGCGCCGATGAGGGAGCGACTAGGTAACAAG
CATCAATAGTTAACATTAGTTAGTGCGGTATGAGGAGACGTCTTATGCTA
ATGACGAAATAATTGAGCACGGAGATTATATGCCACAAATACTCCATTGT
AAGATATATTATGTATTTCATCCGGCACGTAAATGTTGAAGTACCGCCCC
CGTTTTGCCGGCTTGGACGATAAAACAAAATGTGGGTGGAAATATACCAA
CTCGCAGTGTTTGTTCGGCGTTATTGTATGGTGGGCGCGGAGAAGTGTGT
GATATTATGTAGTAAATATGGAACATGGGGGTCGAGTAGAGTGTTAATGG
CGGAGTGGTGGCTTGGCCCGGGTAGCGATAGACAAGTCGAACACATGGGC
ACAACGACTGGTTTGTTTAGCCGCCACGATTTATATATATATAGCCCCTC
CCCGCCTATAGAACGCAGGAGATGTAAAGGCCATGTATATGAATAATACT
GAGATACGCCCTCGCTCCGACGCCAAGCGATCATTTAAACGGTGTCAAAG
AGCAGAGCGACTAGCGGGTGGGCGAGTGTGAAGCAATTATTAAAGTAAAG
AAGAGGAGAAACAAGCCACCGGGAGTAGAACAAAATTATGCGACAGCCGC
GGGCGTACGTATTGTGATATATGAAAATACGATAACACCACTCATCCGCG
CGCACACTATTACAACAAGCACACCCTGCGGGGAGTGAACACTATATCTG
TAGAGAGGGAGTGACCCACGCCAACAATACGCACCCGGAATGATCGATGT
GGATGAGGCTGCCCCAATATGTATCCGCTCCGCGCGCCGCTATTTATCCC
ATTTATTTCCCGCTTCGCGGTAGGACTACATCATATAGTATGTCGGCGAA
GGAGGATAGAGAGACATAATAAAGTGGGATAACGCGCAGAAGAAAAAAAA
TATTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_l04.b1 MSMg01no509_l04.b1 CHROMAT_FILE:
MSMg01no509_l04.b1 PHD_FILE: MSMg01no509_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:01 2005
         (278 letters)



>mm_chr12_75543485_75544162
          Length = 678

 Score =  398 bits (206), Expect = e-115
 Identities = 260/281 (92%), Gaps = 6/281 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaacagggtttcagatttctgtgctcttttattatactatgactccatgagacttcac 60
           |||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 478 cccaacagtgtttcagatttctgtgctcttttataacactatgactccatgagacttcac 419

                                                                       
Query: 61  agttctattgggtagttgttgaaaatgtgatgatattgtatccatggaaaactagacaca 120
           ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 418 agttctactggggagttgttgaaaatgtgatgatattgtatccatggaaaactaaacaca 359

                                                                       
Query: 121 aaacaatgagaggctcaggacacaagaggaacagtggaagagaagaggattattcaccat 180
           |||||||||||||||||||||| ||||||||||||||||||||||||||  |  ||||||
Sbjct: 358 aaacaatgagaggctcaggacaaaagaggaacagtggaagagaagaggaagacccaccat 299

                                                                       
Query: 181 gcttcactatgttgttgtgtggactgtccatacacagcattaaaactgatgatgttgngt 240
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 298 gcttcactatgttgttgtgtggactgtccatacacagcaataaaactgatgatgctgtgt 239

                                                    
Query: 241 attta---tacattcactttaagtgctcacagaggaggaga 278
              ||   |||||||||||||||||||||||||||| ||||
Sbjct: 238 ---tagaatacattcactttaagtgctcacagaggaagaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)