BAC Information

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BAC

Clone NameMSMg01-509M03
Chromosome12 (Build37)
Map Location 31,003,943 - 31,004,528
singlet/doubletsinglet
Overlap geneSntg2
Upstream geneMyt1l, LOC100043496, Pxdn, Tpo
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509M03.T7 (MSMg01no509_m03.b1)MSMg01-509M03.TJ (MSMg01no509_m03.g1)
ACCAG583358AG583359
length740750
length of high quality
(start - end)
411 (328 - 738)586 (81 - 666)
definitionCHROMAT_FILE: MSMg01no509_m03.b1 PHD_FILE: MSMg01no509_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:06 2005CHROMAT_FILE: MSMg01no509_m03.g1 PHD_FILE: MSMg01no509_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXGATCGAAGGTAGCGC
GGAATTCCTGATCTTGGCTAAAATTTTATCATGAATGGGTGTTGAATCTT
GTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTT
TGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAAC
CATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGC
TTTAATGTGTTCTCGGATTCGGTTAGCAAGAATTTTATTGAGGATTTTTG
CATCGATATTCATAAGAGATTTTTGNTTGAAGTTCTCTATCTTTGTTGGG
TCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTT
GGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAACTG
GAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCT
GGTCCTGGGCTTTTTTTGGCTGGGAGACTATTAATAACTGCTTCTATTTC
TTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGACTCAACT
TTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTTGTCCAGGTTTTCC
AGTTTTGTTGAGTATAACCTTTTGTAGAAGGATCTGATGGTGTTTTGGAT
TTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCAGTTCTG
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCACAAACTTGTCCTCT
GACTTCTACATATGTACCATAGCAAGCACATGAACATGCACACGCACACT
AATAATGATGTGATATGATGATATGATAAGATATGATGCAATATGATGAT
AATAAAGTGATTTGAGCCATACCCTGGACTTTCCTATTTGTTGTATGTCC
CTTGGTTTTGGTCTTATGTTTATAGAGTGGATTTTTAAATGATAATTACT
TAAATAGATAATGGTGGTGAGGTCACTGTTGGAATGGCCTTCAAATTCCT
TGTTGATTTCAGTCCCCTCAAGGTCACTAATGAGAAGTCTGGCTTGTGCG
AAGAAATTCTATTTGATTTGGTATTCCAGTTACTGAAGAATAAATCCTAG
AGGTTATAAAAATGCTCAAATGAAATTACACATATAAACAATCTTGTAGT
ATATGTTGTATATGTCAATGACTAAGCTGCAGGAATAATGATTTTATTCT
AACACTAAATAGTAACAACTTCATCTGACCAGCTCCTCATTATGTCAGTG
CTAACATGAGGCACTTCATTCTGTACACCCAGTGTTGGTTGAAATACATT
TTAATTTTTATTCATCATGTGAATATCCCTTCTGTTTACTTTTACACACA
CACACACGTTGATTTTGTATATGTGTGTGAGCTATATGTGTCTGTATGTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_m03.g1 MSMg01no509_m03.g1 CHROMAT_FILE:
MSMg01no509_m03.g1 PHD_FILE: MSMg01no509_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:06 2005
         (586 letters)



>mm_chr12_31003626_31004611
          Length = 986

 Score = 1133 bits (586), Expect = 0.0
 Identities = 586/586 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccacaaacttgtcctctgacttctacatatgtaccatagcaagcacatgaacatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 actccacaaacttgtcctctgacttctacatatgtaccatagcaagcacatgaacatgca 844

                                                                       
Query: 61  cacgcacactaataatgatgtgatatgatgatatgataagatatgatgcaatatgatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 cacgcacactaataatgatgtgatatgatgatatgataagatatgatgcaatatgatgat 784

                                                                       
Query: 121 aataaagtgatttgagccataccctggactttcctatttgttgtatgtcccttggttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aataaagtgatttgagccataccctggactttcctatttgttgtatgtcccttggttttg 724

                                                                       
Query: 181 gtcttatgtttatagagtggatttttaaatgataattacttaaatagataatggtggtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gtcttatgtttatagagtggatttttaaatgataattacttaaatagataatggtggtga 664

                                                                       
Query: 241 ggtcactgttggaatggccttcaaattccttgttgatttcagtcccctcaaggtcactaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggtcactgttggaatggccttcaaattccttgttgatttcagtcccctcaaggtcactaa 604

                                                                       
Query: 301 tgagaagtctggcttgtgcgaagaaattctatttgatttggtattccagttactgaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgagaagtctggcttgtgcgaagaaattctatttgatttggtattccagttactgaagaa 544

                                                                       
Query: 361 taaatcctagaggttataaaaatgctcaaatgaaattacacatataaacaatcttgtagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 taaatcctagaggttataaaaatgctcaaatgaaattacacatataaacaatcttgtagt 484

                                                                       
Query: 421 atatgttgtatatgtcaatgactaagctgcaggaataatgattttattctaacactaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atatgttgtatatgtcaatgactaagctgcaggaataatgattttattctaacactaaat 424

                                                                       
Query: 481 agtaacaacttcatctgaccagctcctcattatgtcagtgctaacatgaggcacttcatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agtaacaacttcatctgaccagctcctcattatgtcagtgctaacatgaggcacttcatt 364

                                                         
Query: 541 ctgtacacccagtgttggttgaaatacattttaatttttattcatc 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctgtacacccagtgttggttgaaatacattttaatttttattcatc 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)