Query= MSMg01no510_o23.b1 MSMg01no510_o23.b1 CHROMAT_FILE:
MSMg01no510_o23.b1 PHD_FILE: MSMg01no510_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:38 2005
(681 letters)
>mm_chr12_97949085_97950165
Length = 1081
Score = 1180 bits (610), Expect = 0.0
Identities = 664/686 (96%), Gaps = 10/686 (1%)
Strand = Plus / Plus
Query: 1 tttatacttgcaaaccagtctgtctccaaagtcattttgatcatactgatgcagctgatc 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 201 tttatacttgcaaaccagtctgtctccaaagtcgttttgatcatactgatgcagctgttc 260
Query: 61 tattgtctctaacatactacattttgagtattttatatgaagtttgaatactgaagatta 120
||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tattgtctctaacttactaccttttgagtattttatatgaagtttgaattctgaagatta 320
Query: 121 gacaaatattaatgcaagatatctttcccccgactctttaattataaaagagaaaggtga 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 gacaaatattaatgcaagatatctttctcccgactctttaattataaaagagaaaggtga 380
Query: 181 agatgcttgggttcattgcccttactaacagcattacagcgtgagtcagaaaagtctaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgcttgggttcattgcccttactaacagcattacagcgtgagtcagaaaagtctaat 440
Query: 241 attttaaagagag----tttatcccactcttgaacaggccccaactacacagcaaatcaa 296
||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttaaagagagcagatt----ccactcttgaacaggccccaactacacagcaaatcaa 496
Query: 297 tagacagttgtaagcaggatacagagaaataggtagaaaaacaacttcaagctatggttc 356
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tagagagttgtaagcaggatacagagaaataggtagaaaaacaacttcaagctatggttc 556
Query: 357 atatctcttttaaataaatatttcaatgtctctagtatgctgaacattttcttataaact 416
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 557 atatctcttttaaataaatatttcaatgtctctagtatgctgaaaatgtacttataaact 616
Query: 417 gaattgagaaacaaaatggtttatcatttacaatatccctctctataagagcactgcaca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaattgagaaacaaaatggtttatcatttacaatatccctctctataagagcactgcaca 676
Query: 477 ctccttggtttgaatttttaaataaaatgtccatctttaaacattctcagttatttcctc 536
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctccttgatttgaatttttaaataaaatgtccatctttaaacattctcagttatttcctc 736
Query: 537 tgtgaacaaattccttcctccaatatgttatgaaattttagaagactcactcattgaatc 596
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgtaaacaaattccttcctccaatatgttatgaaattttagaagactcactcattgaatc 796
Query: 597 tgatttatttctgtatatacaccaagaaatgaaaggtgatcatgttggt-gtcagtttaa 655
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 797 tgatttatttctgtatatacaccaagaaatgaaaggtgatcatgttggttgtcagtttaa 856
Query: 656 ataaaatgtctctgcaaaaaattgca 681
|||||||||||||| |||||||||||
Sbjct: 857 ataaaatgtctctg-aaaaaattgca 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_o23.g1 MSMg01no510_o23.g1 CHROMAT_FILE:
MSMg01no510_o23.g1 PHD_FILE: MSMg01no510_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:39 2005
(676 letters)
>mm_chr12_98124229_98125301
Length = 1073
Score = 1168 bits (604), Expect = 0.0
Identities = 657/680 (96%), Gaps = 11/680 (1%)
Strand = Plus / Minus
Query: 1 ctattactgggtaaaaacttaagttttaggcatgaaaattagaggataaggaataggctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 ctattactgggtaaaaacttaagttttaggcatgaaaattagaggataaggaataggctc 814
Query: 61 aagtgattattatatgtttatagaattattgtcccgatatatagcatt---tttttatat 117
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 813 aagtgattattatacacttatagaattattgtcccgatatatagcattttgtttttatat 754
Query: 118 atctttgtgattcaattctttgtgaacttataatagatgataagtttttaatctacatat 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 atctttgtgattcaattctttgtgaacttataatagatgataagtttttaatctacatat 694
Query: 178 aatgtaaatattgttactcttcaaagctttcttaaatttaaacttataaaatataaatgt 237
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 693 aatgtaaatatggttactcttcaaagctttcttaaatttaaacttagaaaatataaatgt 634
Query: 238 tcaaattaaacttgtatatactagaggaaaatgagctaagcattattttcttactcaaag 297
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tcaaattaaacatgcatatactagaggaaaatgagctaagcattattttcttactcaaag 574
Query: 298 gaagggcatcatataagatggcctcatagaatgccctgttgaatacttccatacttattt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaagggcatcatataagatggcctcatagaatgccctgttgaatacttccatacttattt 514
Query: 358 ttagttcatcattgtaaatatgaggatgggtgtcacacaaattgcttttatcaccttgaa 417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 513 ttagttcatcattgtaaatatgaggatgtgtgtcacacaaattgcttttatcaccttgaa 454
Query: 418 tagcagcaactgactttgaatattttaaaaggcagaccatatctcaatcaattaagacca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tagcagcaactgactttgaatattttaaaaggcagaccatatctcaatcaattaagacca 394
Query: 478 ggttaataaagagatattgacctaggcttctacatatccttccatgtgcagaaaaatcta 537
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 393 ggttaataaagagatatggacctaggcttctacatatcctttcatgtgcagaaaaatcta 334
Query: 538 aaactatataaggcagtagatatggtctagtatgactctcttca-ttttttgatcttcca 596
|||||||||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct: 333 aaactatataaggcagtaga-------tagtattactctcttcatttttttgatcttcca 281
Query: 597 gtaggaatatcagtagagaatatgaatatctctgactacccgtctctgaaaatcagcccc 656
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 280 gtaggaatatcagtagagaatatgaatatctctgactacctgtctctgaaaatcagcccc 221
Query: 657 agtaaaaacacttccaggag 676
||||||||||||||||||||
Sbjct: 220 agtaaaaacacttccaggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1073
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1063
Effective search space: 707958
Effective search space used: 707958
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
