BAC Information

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BAC

Clone NameMSMg01-511L06
Chromosome12 (Build37)
Map Location 74,579,934 - 74,580,233
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356
Downstream geneTmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511L06.T7 (MSMg01no511_l06.b1)MSMg01-511L06.TJ (MSMg01no511_l06.g1)
ACCAG584836AG584837
length739736
length of high quality
(start - end)
466 (69 - 534)447 (75 - 521)
definitionCHROMAT_FILE: MSMg01no511_l06.b1 PHD_FILE: MSMg01no511_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:38 2005CHROMAT_FILE: MSMg01no511_l06.g1 PHD_FILE: MSMg01no511_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATCCGCGGA
ATTCTCAACTGTATGAAACCAAATGGCTGATAAACACCTAAGAAAATGTT
CAACATCCTTAGTCATCAGGGAATTGCAAATCAAAACAACCCTGAGATTC
TACTTCATATCAGTCAGAATGGCTAAGATTAAAAACTCAGGTGACAGCAG
ATGCTGGCAAGGATGTGGAGAAAGAGGAACAGTCCTCCAATGCTGGTGGG
ATTGCAAGCTGGTACAACCACTCTGAAAATCAGTTTGGCGGTTCCTCAGA
AAATCAGACATAGTACCTGAGGATCCAGCAATACCACTCCTGGGCATATA
CCCAGAAGATGCTCCAACGTGTAATAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGTTGGAAAGAACCCAGACATCTC
TCAACAGAGGAATGGATAGAGAAAATGTGGTACATTTACACAATGGAGTA
CTATGCAGCTATTAAAAACAATGCATTTATGAAACTCTTAGGCAAATGGA
TGGATCTAGAGGATATCATCCTGAGTGATGAAACCCAATCACAAAAGAAC
ACACATGATATGCACTCACTGAGAAGTGGCTATTAGCCCATAAACCTATA
ATACCCAAGATACAATTCACAAAACACATGAAACTCAAGATGAAGGAAGA
CCAAAGTGTGGATACTTCAATCCCTCTTAAAAGGGAGAA
AATGCTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATGTACACCGTCTTTGTTATGTAA
GCCTTGTTCTCCAAGCTAAAGTTAATAAAAGGCTAGAGTCTGTAATTGGG
AAGAGAGAGAGAGAGAGAGAGAGAAGACTTGAGAATCGAACGGAGTGAGG
GGTCTCAGGAGAAGGATAAGAAGAAAGGAGAGGACACGAGGCCAGATGAA
AGATCATGAGCACATGGCCAGGGGACCCTGAGAATAACCCAGGTGAGAAT
CAAACAGCAAGTGACAAGGGACCTATGACTGGGGTGTAAGTTAGAATAGC
TCAAAACCTGCCCAAGCTAGGCTTACAGCTTGAAAATAAAATAACAGGCT
TTTGTGTCTTTTGTATGGGCTAGCTAGGATATATCATTCATATTACAAAG
AAGGTATCAACAGAGCCTTGTGTTCTCTTTTGGGAGAGCGGATTGCCATA
AACGGAAATTGTCTCGCGTAGGGTGCCTACTCCTCATTCTGGTCCCCCTT
CCTTTTCTCTGCCGTGCTGTGACTCTGCCTAAAGGGCCCAAGATTGAACA
GATCTTGCAATTTTGGTTTCCCAGACTGTTAACTAAGACCTCCTCCCTGC
AAAGTTCCAGTTTGTATCCTTTGGCCGCTGCCTCAGAGGACTATTGAACA
CAACCCTGACCAGCTTCCTTCCTCTCCCTCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_l06.g1 MSMg01no511_l06.g1 CHROMAT_FILE:
MSMg01no511_l06.g1 PHD_FILE: MSMg01no511_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:38 2005
         (447 letters)



>mm_chr12_74579387_74580233
          Length = 847

 Score =  534 bits (276), Expect = e-156
 Identities = 294/300 (98%)
 Strand = Plus / Minus

                                                                       
Query: 148 agaaaggagaggacacgaggccagatgaaagatcatgagcacatggccaggggaccctga 207
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 847 agaaaggagaggacacgaggccagatgaaggatcatgagcacatggccaggggaccctga 788

                                                                       
Query: 208 gaataacccaggtgagaatcaaacagcaagtgacaagggacctatgactggggtgtaagt 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gaataacccaggtgagaatcaaacagcaagtgacaagggacctatgactggggtgtaagt 728

                                                                       
Query: 268 tagaatagctcaaaacctgcccaagctaggcttacagcttgaaaataaaataacaggctt 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 727 tagaatagctcaaaacctgcccaagctaggcttacagcttgaaaataaaataataggctt 668

                                                                       
Query: 328 ttgtgtcttttgtatgggctagctaggatatatcattcatattacaaagaaggtatcaac 387
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 667 ttgtgtcttttgtatgggctagctaggatataccattcatattacaaagaaggtatcaac 608

                                                                       
Query: 388 agagccttgtgttctcttttgggagagcggattgccataaacggaaattgtctcgcgtag 447
           ||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 607 agagttttgtgttctcttttgggagagtggattgccataaacggaaattgtctcgcgtag 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)