BAC Information

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BAC

Clone NameMSMg01-512P14
Chromosome12 (Build37)
Map Location 113,397,240 - 113,548,274
singlet/doubletdoublet
Overlap geneKif26a
Upstream gene4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik
Downstream geneA730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512P14.T7 (MSMg01no512_p14.b1)MSMg01-512P14.TJ (MSMg01no512_p14.g1)
ACCAG585809AG585810
length893761
length of high quality
(start - end)		237 (38 - 274)654 (65 - 718)
definitionCHROMAT_FILE: MSMg01no512_p14.b1 PHD_FILE: MSMg01no512_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:19 2005CHROMAT_FILE: MSMg01no512_p14.g1 PHD_FILE: MSMg01no512_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,548,046 - 113,548,274)(113,397,240 - 113,397,893)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTG
GTTTAGTCCTCTGTAGTCAGGCGGACCTGAACCCCAGGTGGCAAGGCTGG
TGTCAGGTGCCCTTGGGAATCCCAGACCTGAGCAGCTGGGTCTAGGGCCC
AGAGCTAGGCTGCCATACACTCCTCCAGCCCAGAGGTGGCGCTGCAGGCA
ACTTCGCAGAAGTGGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGAGNGNNNNNNNTNNNGNNTNTGNNNNNNNN
NNNNTTNTTTTTTTTTTTNTCTTNTTTTTTNCCNTCTCTTTTTTTTTTTT
TTTTTTTCCTTCCTTTTCTTCTTCTTTTTTTTCTCCTCTCCCTCCTCTTT
TTTTCTTTTGGGGCACCCCCCCCCCCTGGCTGCGCTCTGTTTTTCTTTCT
TTCTGTCTTGTTTCCCCCGCGCCCCTTTTTTCCTGCTCTCCAGCTCTACT
TCGATTTTTGTTTTGTTTTCCGGCGTCCTTTCGTGGTTTCATTTAATATT
TTTTTACCTTTGCGCCCTACTCTGCGTCAATGTTCTTTCTTCCCTCTCCC
TTTCTCTCGTCTTTCTCTTTTTTCTCTGCTGCTCATTTTGTTTCTACTCT
CCTTTCTTCGATATTTCCTCTTATTAGTTCTATACTCTTCTCCCATTCTC
CGTTGTTTTCGACCCTTTTTCTCCCGTGTCCTTGTCGTCTTTTTTATTTG
ACTTTGTATTCGACCCGCTTCTCCTCGCCCTCGTTTTGTTAATTTACTTT
CCCCCTCCCATACCATATTTTATTACCATTTCTTCTTATCTCTACTTCCC
ACTTTTACAATATTTATATTTATTCCTCTTCCATGCCACATAN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGCCCAAGCTGGAGCTGGTGCCTGGGCTTTTGTTCA
GGGGCTCAGTTTTTGAGGCCATCTGTCCTTGGGGTTGGAGTACCATGCTA
ATCATGGCCTAGCACCCTTCCCTTACCAAACTGAAGGCAGGCCAGCTGCT
CTGTCCTTCTGGGGTTTTGACCCAACAGCTGGGCTGCCTGAGGAGTGGGA
ACAGAACCCAGGGGTAGGGTGCAGATGCCCTGACTGTTCAGGCAAATTAA
CAATTCCTAGAGGAGGTGACGTTGAACTGGATCTTAAAGGAAGCCTCAGG
TGACATGCTCAGACCTAAAACTCTGATCCCCAGGGGTGTTGTGTGGCCCC
GTTGATTGACTGGCCATAGCCTTAGGTCTGAGCAGACATGGATCAAAGCT
CATGCTGACGGTCTTCATGCTTTGGTGTGGTGGTGGTGGGGAGGATGCAG
GGAGGAACCAGTCAATGGCTTTTGGTTAGGCAAGCTCGACCATGGCCTAC
ATGCCATAAAACGTGGGTATTTAAGGCCCCTGCTTCCCATCGCACATTGA
TTGTGTTCAGGAAAAGGTGGGAATGGATTTATAATTAGAGGACAGTCCTG
GCAATCAATAGGGAGATTATTAGAACCATAAATAGAACTTTATGCTGCAG
TTGAGGCAATGTCCCTTGAAGCAAGGTGGCGATCACTGAAGATCAAATAC
TGCCTGTGCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_p14.b1 MSMg01no512_p14.b1 CHROMAT_FILE:
MSMg01no512_p14.b1 PHD_FILE: MSMg01no512_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:19 2005
         (237 letters)



>mm_chr12_113547894_113548530
          Length = 637

 Score =  420 bits (217), Expect = e-122
 Identities = 226/229 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttggtttagtcctctgtagtcaggcggacctgaaccccaggtggcaaggctggt 64
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattcttggcagagtcctctgtagtcaggcggacctgaaccccaggtggcaaggctggt 322

                                                                       
Query: 65  gtcaggtgcccttgggaatcccagacctgagcagctgggtctagggcccagagctaggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaggtgcccttgggaatcccagacctgagcagctgggtctagggcccagagctaggct 262

                                                                       
Query: 125 gccatacactcctccagcccagaggtggcgctgcaggcaacttcgcagaagtggctctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccatacactcctccagcccagaggtggcgctgcaggcaacttcgcagaagtggctctgt 202

                                                            
Query: 185 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 233
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 120
Number of extensions: 49
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no512_p14.g1 MSMg01no512_p14.g1 CHROMAT_FILE:
MSMg01no512_p14.g1 PHD_FILE: MSMg01no512_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:19 2005
         (654 letters)



>mm_chr12_113397040_113398093
          Length = 1054

 Score = 1257 bits (650), Expect = 0.0
 Identities = 653/654 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcccaagctggagctggtgcctgggcttttgttcaggggctcagtttttgaggccatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcccaagctggagctggtgcctgggcttttgttcaggggctcagtttttgaggccatct 260

                                                                       
Query: 61  gtccttggggttggagtaccatgctaatcatggcctagcacccttcccttaccaaactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccttggggttggagtaccatgctaatcatggcctagcacccttcccttaccaaactga 320

                                                                       
Query: 121 aggcaggccagctgctctgtccttctggggttttgacccaacagctgggctgcctgagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcaggccagctgctctgtccttctggggttttgacccaacagctgggctgcctgagga 380

                                                                       
Query: 181 gtgggaacagaacccaggggtagggtgcagatgccctgactgttcaggcaaattaacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgggaacagaacccaggggtagggtgcagatgccctgactgttcaggcaaattaacaat 440

                                                                       
Query: 241 tcctagaggaggtgacgttgaactggatcttaaaggaagcctcaggtgacatgctcagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctagaggaggtgacgttgaactggatcttaaaggaagcctcaggtgacatgctcagac 500

                                                                       
Query: 301 ctaaaactctgatccccaggggtgttgtgtggccccgttgattgactggccatagcctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaaaactctgatccccaggggtgttgtgtggccccgttgattgactggccatagcctta 560

                                                                       
Query: 361 ggtctgagcagacatggatcaaagctcatgctgacggtcttcatgctttggtgtggtggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtctgagcagacatggatcaaagctcatgctgacggtcttcatgctttggtgtggtggt 620

                                                                       
Query: 421 ggtggggaggatgcagggaggaaccagtcaatggcttttggttaggcaagctcgaccatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtggggaggatgcagggaggaaccagtcaatggcttttggttaggcaagctcgaccatg 680

                                                                       
Query: 481 gcctacatgccataaaacgtgggtatttaaggcccctgcttcccatcgcacattgattgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcctacatgccataaaacgtgggtatttaaggcccctgcttcccatcgcacattgattgt 740

                                                                       
Query: 541 gttcaggaaaaggtgggaatggatttataattagaggacagtcctggcaatcaataggga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttcaggaaaaggtgggaatggatttataattagaggacagtcctggcaatcaataggga 800

                                                                 
Query: 601 gattattagaaccataaatagaactttatgctgcagttgaggcaatgtcccttg 654
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 801 gattattagaaccataaatagaactttaggctgcagttgaggcaatgtcccttg 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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