Query= MSMg01no514_f09.b1 MSMg01no514_f09.b1 CHROMAT_FILE:
MSMg01no514_f09.b1 PHD_FILE: MSMg01no514_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:11 2005
(702 letters)
>mm_chr12_69963093_69964194
Length = 1102
Score = 1288 bits (666), Expect = 0.0
Identities = 691/700 (98%), Gaps = 4/700 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggttgtatca--aaagcctatggataaagcatttcatgtatttttccatacc 62
||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggttg-a-cagaaaagcctatggataaagcatttcatgtatttttccatacc 262
Query: 63 agtaagtctcttttgatatctgcccatttataatcaaatgcatttgcagtttccaaaccc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agtaagtctcttttgatatctgcccatttataatcaaatgcatttgcagtttccaaaccc 322
Query: 123 cacacttaaacttattagtatctaggagatgtgcagtaatatagaccatcaaacacaaga 182
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 323 cacacttaaacgtattagtatctaggagatgtgcagtaatatagaccatcgaacacaaga 382
Query: 183 gccaagagctaggttacacagtgtagattactagaactgaggtcaaaagacccagcgttt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gccaagagctaggttacacagtgtagattactagaactgaggtcaaaagacccagcgttt 442
Query: 243 gatcttggatttgaacataactttgtaataaaatgtaggtactggggacttggatactgg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gatcttggatttgaacataactttgtaataaaatgtaggtactggggacttggatactgg 502
Query: 303 taatgaaaagtgactggataacttttagcatttgatcagatcacaatggctgtcccatta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 taatgaaaagtgactggataacttttagcatttgatcagatcacaatggctgtcccatta 562
Query: 363 atctctggggacatattttacagaaacatgtagccaacatttgatgctaacttaagatgc 422
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 563 atctctggggacatattttacagaaacatgtagccaacatttgatgctaatttaagatgc 622
Query: 423 tgttggaaatatctgtagctatgagtaagctattgtagaaaaaaggtgaaaaaggagagc 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cgttggaaatatctgtagctatgagtaagctattgtagaaaaaaggtgaaaaaggagagc 682
Query: 483 acccaggttagtcaaagcagaacaaacattgagaaagagctccacctactggcatctgtt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acccaggttagtcaaagcagaacaaacattgagaaagagctccacctactggcatctgtt 742
Query: 543 cccttacagctaacggaaagacattcataacccacactgaagaagcagaaaggtgacctc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cccttacagctaacggaaagacattcataacccacactgaagaagcagaaaggtgacctc 802
Query: 603 agacttcactgaaggaaaacttcactgggggcttaagttaagccataggcaatgttcacc 662
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 803 agacttcactgaaggaaaacttcactgggggcttaggttaagccataggcaatgttcacc 862
Query: 663 aaagctggctgaacttctgatttcagctcacactgggaga 702
||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 aaagctggctgaacttctgatttcagctcacactgggaga 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no514_f09.g1 MSMg01no514_f09.g1 CHROMAT_FILE:
MSMg01no514_f09.g1 PHD_FILE: MSMg01no514_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:11 2005
(574 letters)
>mm_chr12_70132426_70133399
Length = 974
Score = 1110 bits (574), Expect = 0.0
Identities = 574/574 (100%)
Strand = Plus / Minus
Query: 1 tcctcaaatttgtaacatttttttacctgtatcatgaaacccaaagggaggctgctacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tcctcaaatttgtaacatttttttacctgtatcatgaaacccaaagggaggctgctacat 715
Query: 61 gcaactctgtgagctcagttggtttttgaaaagaacaaatgtaaccaagaacattcacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gcaactctgtgagctcagttggtttttgaaaagaacaaatgtaaccaagaacattcacat 655
Query: 121 tacagagccaattatgcagaaacttcactaaatctgaactctaacagtggcagcttctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tacagagccaattatgcagaaacttcactaaatctgaactctaacagtggcagcttctgc 595
Query: 181 ctctgctgtataaggatacagtctggggcattcacagtatgtgctaatagtttgatgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctctgctgtataaggatacagtctggggcattcacagtatgtgctaatagtttgatgaag 535
Query: 241 atctcctggaaagatcggtcacacacaagcgttaagggaacaaacctaaaacctatacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 atctcctggaaagatcggtcacacacaagcgttaagggaacaaacctaaaacctatacta 475
Query: 301 attgggcagcgctgagcttgaatttgtattattttgaagaaataaacagactcagcctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 attgggcagcgctgagcttgaatttgtattattttgaagaaataaacagactcagcctct 415
Query: 361 aggtgctagtgtccaattaatagtgactgacaacccagtaaggctggatttaggattctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aggtgctagtgtccaattaatagtgactgacaacccagtaaggctggatttaggattctt 355
Query: 421 ggctttataatctttcttatctcaccttgaactctcgttctttccatcccaatcagggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ggctttataatctttcttatctcaccttgaactctcgttctttccatcccaatcagggag 295
Query: 481 agacctgggattgactgtcacaatcacacatgatagtttgctgtcttttcattgtgtaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 agacctgggattgactgtcacaatcacacatgatagtttgctgtcttttcattgtgtaat 235
Query: 541 gctatttcaaccagttgtccctctgtgtagctca 574
||||||||||||||||||||||||||||||||||
Sbjct: 234 gctatttcaaccagttgtccctctgtgtagctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
