Query= MSMg01no514_j10.b1 MSMg01no514_j10.b1 CHROMAT_FILE:
MSMg01no514_j10.b1 PHD_FILE: MSMg01no514_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:32 2005
(689 letters)
>mm_chr12_42291058_42292149
Length = 1092
Score = 1292 bits (668), Expect = 0.0
Identities = 682/688 (99%), Gaps = 3/688 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtgtttgtttctaatgtggtaaacatgacacaataagaactttaaggtaatat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gaattcagtgtttgtttctaatgtggtaaacatgacacaataagaactttaaggtaatat 726
Query: 65 tatgagtcttccagtttacacagagatgtttgtaaaagaaatctagagagtaaggaaacg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tatgagtcttccagtttacacagagatgtttgtaaaagaaatctagagagtaaggaaacg 666
Query: 125 ttctgaaatcagtaactggactagtttactttaattcccctggaaaactaaggaagtgcc 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ttctgaaatcaataactggactagtttactttaattcccctggaaaactaaggaagtgcc 606
Query: 185 cacaaagtggttcttaagtttctcctcattttgaaatctaatatcaatttttaataactt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cacaaagtggttcttaagtttctcctcattttgaaatctaatatcaatttttaataactt 546
Query: 245 caattgatgaagtaattcctcatgtgcctttaacttcccaaatactcaggcactgtgatg 304
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 545 caattgatgaagtaattcctcatgtgcctttaacttcccaaatactcaggtactgtgatg 486
Query: 305 aaaaccaggttatgatcattagcttatctgtaatcatacaagtccgaatgctcctgctca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaaaccaggttatgatcattagcttatctgtaatcatacaagtccgaatgctcctgctca 426
Query: 365 ttaaggacagggtaccaatcacatactgtcatttaaaccagggaacaacaaaaagattat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttaaggacagggtaccaatcacatactgtcatttaaaccagggaacaacaaaaagattat 366
Query: 425 ttcaattatagatcagtaccttcttgaggagagatgaagtcatttccatgagccaaccta 484
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 365 ttcaattatagatcagtaccttcttgaggaaagatgaagtcatttccatgagccaaccta 306
Query: 485 ctattcctttctctttttttccttcttttaatttcctctttcatttagcaaatattt--- 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctattcctttctctttttttccttcttttaatttcctctttcatttagcaaatatttatt 246
Query: 542 ttttttaagcctcagaaaattgcatctgaaggcaggcaaggtataaataataaatattct 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttttttaagcctcagaaaattgcatctgaaggcaggcaaggtataaataataaatattct 186
Query: 602 ttataatttgattccatattcatcgcaatccatcgacaacattccttaaatagaatgatc 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ttataatttgattccatattcatcgcaatccatcgacaacattccttaaatagaatgatc 126
Query: 662 tgtggcgagcatcatgctagcatccttt 689
||||||||||||||||||||||||||||
Sbjct: 125 tgtggcgagcatcatgctagcatccttt 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1092
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1082
Effective search space: 734678
Effective search space used: 734678
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_j10.g1 MSMg01no514_j10.g1 CHROMAT_FILE:
MSMg01no514_j10.g1 PHD_FILE: MSMg01no514_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:33 2005
(591 letters)
>mm_chr12_42123291_42124282
Length = 992
Score = 1044 bits (540), Expect = 0.0
Identities = 579/592 (97%), Gaps = 1/592 (0%)
Strand = Plus / Plus
Query: 1 aatgctatgcttgtagctggttggggagcctgtgcattgagctctgggcacatgtaacac 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgctatgcttgtagctggttgaagagcctgtgcattgagctctgggcacatgtaacac 260
Query: 61 tggagttttatcttctctacatctttgtacaccaccctatagttggacatttatccattt 120
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tggagttgtatcttctctacatctttgtaaaccaccctatagttggacatttatccattt 320
Query: 121 atagaatgtttattgaaaaattctgaagtaaatagagccatgagaatataataatgagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaatgtttattgaaaaattctgaagtaaatagagccatgagaatataataatgagta 380
Query: 181 aggtaggttggctatccattcacatatcttttatactgttaaacagatatacataagaaa 240
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 381 aggtaggttggctatccattcacatgtctttcatactgttaaacagatatacataagaaa 440
Query: 241 atgtgaaaatagtagaaattatagcatgagtatgagactctttagaa-ctcggttcatag 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 atgtgaaaatagtagaaattatagcatgagtatgagactctttagaaactcggttcatag 500
Query: 300 gacgcatagggaaaagatgggtttacatttggaaagctatgttgagagtttgctttataa 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 gacgcatagggaaaagatgggtttacatttggaaagctatgttgagagtctgctttataa 560
Query: 360 ttgttaaggggaaattgggctcactggtcttaagaggtcatattatgagaatattaaagg 419
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 561 tttttaaggggaaattgggctcactggtcttaagacgtcatattatgagaatattaaatg 620
Query: 420 tatatgtgaattgtctactagtaatgaaagtgctatgatagtaataacatcaggtagtgt 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 tatatgtgaattgtctactagtaataaaagtgctatgatagtaataacatcaggtagtgt 680
Query: 480 atacatttaagtatgtataaataggtctacatatagtgataatacataagatgacatggt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atacatttaagtatgtataaataggtctacatatagtgataatacataagatgacatggt 740
Query: 540 atgctataagataaaggtataacagcataagtaaacaaaagtaagagtgtaa 591
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 atgctataagataaaggtataacagcataagtaaacaaaaataagagtgtaa 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 992
Length adjustment: 10
Effective length of query: 581
Effective length of database: 982
Effective search space: 570542
Effective search space used: 570542
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
