BAC Information

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BAC

Clone NameMSMg01-516F24
Chromosome12 (Build37)
Map Location 16,534,847 - 16,694,390
singlet/doubletdoublet
Overlap geneLpin1, Ntsr2, Greb1
Upstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneE2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516F24.T7 (MSMg01no516_f24.b1)MSMg01-516F24.TJ (MSMg01no516_f24.g1)
ACCAG588386AG588387
length753755
length of high quality
(start - end)		681 (53 - 733)668 (83 - 750)
definitionCHROMAT_FILE: MSMg01no516_f24.b1 PHD_FILE: MSMg01no516_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:04 2005CHROMAT_FILE: MSMg01no516_f24.g1 PHD_FILE: MSMg01no516_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,534,847 - 16,535,523)(16,693,723 - 16,694,390)
sequence
NNTTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTTTGCATTAGCAACCACTGTCTTCCTCCTAAGGCCT
GGGCCCCGAGTTCCTCCCATCTCGTGGCTTTGCCCTTGCAGACCTTTGTT
TCTAGTTAATGGCTAAAGATCAAGAGATGTTAAAGACTACATAAGAGATG
TTAAGGACTACCTCTGTTTGCTGCTGAGGTCCAGAAGTAATGAAAGTCAC
AACTGCTCATGTTCCTGTTGACAAAAGGCAGCAGCCCGGCCCCTAATCAA
GACAGGACTGGGAAATCCAGTCACCACCACAGGGAAGGTAAATAGACCCA
AAGAAGGACAACCAGCTACTTCAGGCACACCTTCCAGGCTCAGGGTCTCT
AAACTCCACCTCTGTCCACACATCCAGAGGAACCCCCAAACCATTCTCAC
TGCCATCAAATGTTTGACCATTGGGAGCTCCACTCCACAGCTAAAACTGC
CATTCCACTGCACTGTTACACTGCACCATTACACTACCTAACAGATCAAT
GACAAACAACAGAAGGCAGAGAAAAGGAATGGTGTTTCCGTCTTTGCCTG
AGCTCACACTCTAGTGTGTCAAATTGGCTGCTTTGGTTTGTGGCTCCCCA
GTTCAGCTTCTTCCAGGAGAGCTTATGTTCCATGGGCACTCTCACTGCGT
GGGCACTGCTCTCCTTCCAAACCATAGCTGGGATGTCACAGATACAGCTG
AGG

NNNNTTGCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAATGATCCGTAGGAAT
TTGCCAAAACAGGTGAATGGGAAAGAGCATGTGCAAAAGAGTTGGGCAGA
GTCTTTGGGGGAAGAACTGGTCTCGGTAGGGTGTGGCTAGAGCACAGAAC
GGAAGGTATGGGTGCCCGAGGAGGCAGCTGTGCACTGGGAAGCAGGTGGG
CTTCTTCACTGCACTCTGTAGGGAAGGGTGCAGCTTGGATGAGCTCTTCC
TAGCTTATTGGTCTTTGCAGAGGACTGGAAGTTAGCTATTAATGAACATC
CAAACTCTAGTAGTTTAGATTTGAGAGTTTCATCTTAATTCAGACCCACA
CAGGTGAAGCTGGAAGACATAGAGGGTTGGGGCAGATGGGAGCCAGGGAT
ACATGCTCGTGGTAGGGAATTGAAGACTGTGGTCCTTCTGGAAAGGCCCC
AAGGCAAGGATTCCCACTTGTTGTTTGTCCTGTTTATGAAGGGAAACACC
ATCCAGTGGCTTTAATTCAGCCTCATTGTTGGTTTGGCCATCCAAGGTAT
AGCAAGTGCCTTTTTTAGGACTAAGTATGTGACTTTACTATAGATAATAT
TGGGAAGCATTTCTAACAGGTCAAAGTACTAGTACTAATACTATTCAGAT
AAACGAAGACCATCTTCTCCCACGTTGTACATGAGGTTTTTGTTTTAAGA
ATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_f24.b1 MSMg01no516_f24.b1 CHROMAT_FILE:
MSMg01no516_f24.b1 PHD_FILE: MSMg01no516_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:04 2005
         (681 letters)



>mm_chr12_16534643_16535723
          Length = 1081

 Score = 1294 bits (669), Expect = 0.0
 Identities = 675/677 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattttgcattagcaaccactgtcttcctcctaaggcctgggccccgagttcctc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttgcatcagcaaccactgtcttcctcctaaggcctgggccccgagttcctc 264

                                                                       
Query: 65  ccatctcgtggctttgcccttgcagacctttgtttctagttaatggctaaagatcaagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccatctcgtggctttgcccttgcagacctttgtttctagttaatggctaaagatcaagag 324

                                                                       
Query: 125 atgttaaagactacataagagatgttaaggactacctctgtttgctgctgaggtccagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgttaaagactacataagagatgttaaggactacctctgtttgctgctgaggtccagaa 384

                                                                       
Query: 185 gtaatgaaagtcacaactgctcatgttcctgttgacaaaaggcagcagcccggcccctaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaatgaaagtcacaactgctcatgttcctgttgacaaaaggcagcagcccggcccctaa 444

                                                                       
Query: 245 tcaagacaggactgggaaatccagtcaccaccacagggaaggtaaatagacccaaagaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaagacaggactgggaaatccagtcaccaccacagggaaggtaaatagacccaaagaag 504

                                                                       
Query: 305 gacaaccagctacttcaggcacaccttccaggctcagggtctctaaactccacctctgtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacaaccagctacttcaggcacaccttccaggctcagggtctctaaactccacctctgtc 564

                                                                       
Query: 365 cacacatccagaggaacccccaaaccattctcactgccatcaaatgtttgaccattggga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cacacatccagaggaacccccaaaccattctcactgccatcaaatgtttgaccattggga 624

                                                                       
Query: 425 gctccactccacagctaaaactgccattccactgcactgttacactgcaccattacacta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctccactccacagctaaaactgccattccactgcactgttacactgcaccattacacta 684

                                                                       
Query: 485 cctaacagatcaatgacaaacaacagaaggcagagaaaaggaatggtgtttccgtctttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctaacagatcaatgacaaacaacagaaggcagagaaaaggaatggtgtttccgtctttg 744

                                                                       
Query: 545 cctgagctcacactctagtgtgtcaaattggctgctttggtttgtggctccccagttcag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cctgagctcacactctagtgtgtcaaattggctgctttggtttgtggctccccagttcag 804

                                                                       
Query: 605 cttcttccaggagagcttatgttccatgggcactctcactgcgtgggcactgctctcctt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 805 cttcttccaggagagcttatgttccatgggcactctcactgcgtgggcactgctctcctc 864

                            
Query: 665 ccaaaccatagctggga 681
           |||||||||||||||||
Sbjct: 865 ccaaaccatagctggga 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_f24.g1 MSMg01no516_f24.g1 CHROMAT_FILE:
MSMg01no516_f24.g1 PHD_FILE: MSMg01no516_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:04 2005
         (668 letters)



>mm_chr12_16693523_16694590
          Length = 1068

 Score = 1292 bits (668), Expect = 0.0
 Identities = 668/668 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaatgatccgtaggaatttgccaaaacaggtgaatgggaaagagcatgtgcaaaagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tgaatgatccgtaggaatttgccaaaacaggtgaatgggaaagagcatgtgcaaaagagt 809

                                                                       
Query: 61  tgggcagagtctttgggggaagaactggtctcggtagggtgtggctagagcacagaacgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tgggcagagtctttgggggaagaactggtctcggtagggtgtggctagagcacagaacgg 749

                                                                       
Query: 121 aaggtatgggtgcccgaggaggcagctgtgcactgggaagcaggtgggcttcttcactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aaggtatgggtgcccgaggaggcagctgtgcactgggaagcaggtgggcttcttcactgc 689

                                                                       
Query: 181 actctgtagggaagggtgcagcttggatgagctcttcctagcttattggtctttgcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 actctgtagggaagggtgcagcttggatgagctcttcctagcttattggtctttgcagag 629

                                                                       
Query: 241 gactggaagttagctattaatgaacatccaaactctagtagtttagatttgagagtttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gactggaagttagctattaatgaacatccaaactctagtagtttagatttgagagtttca 569

                                                                       
Query: 301 tcttaattcagacccacacaggtgaagctggaagacatagagggttggggcagatgggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tcttaattcagacccacacaggtgaagctggaagacatagagggttggggcagatgggag 509

                                                                       
Query: 361 ccagggatacatgctcgtggtagggaattgaagactgtggtccttctggaaaggccccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccagggatacatgctcgtggtagggaattgaagactgtggtccttctggaaaggccccaa 449

                                                                       
Query: 421 ggcaaggattcccacttgttgtttgtcctgtttatgaagggaaacaccatccagtggctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggcaaggattcccacttgttgtttgtcctgtttatgaagggaaacaccatccagtggctt 389

                                                                       
Query: 481 taattcagcctcattgttggtttggccatccaaggtatagcaagtgccttttttaggact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 taattcagcctcattgttggtttggccatccaaggtatagcaagtgccttttttaggact 329

                                                                       
Query: 541 aagtatgtgactttactatagataatattgggaagcatttctaacaggtcaaagtactag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aagtatgtgactttactatagataatattgggaagcatttctaacaggtcaaagtactag 269

                                                                       
Query: 601 tactaatactattcagataaacgaagaccatcttctcccacgttgtacatgaggtttttg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tactaatactattcagataaacgaagaccatcttctcccacgttgtacatgaggtttttg 209

                   
Query: 661 ttttaaga 668
           ||||||||
Sbjct: 208 ttttaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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