BAC Information

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BAC

Clone NameMSMg01-516K16
Chromosome12 (Build37)
Map Location 25,541,720 - 25,716,360
singlet/doubletdoublet
Overlap geneMboat2, EG629397, C330002I19Rik
Upstream geneLOC668703, LOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719
Downstream geneId2, LOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516K16.T7 (MSMg01no516_k16.b1)MSMg01-516K16.TJ (MSMg01no516_k16.g1)
ACCAG588608AG588609
length745745
length of high quality
(start - end)		693 (53 - 745)609 (82 - 690)
definitionCHROMAT_FILE: MSMg01no516_k16.b1 PHD_FILE: MSMg01no516_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:29 2005CHROMAT_FILE: MSMg01no516_k16.g1 PHD_FILE: MSMg01no516_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,715,671 - 25,716,360)(25,541,720 - 25,542,328)
sequence
NNNNNAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGGATGGCTGCGAACTGAACCAGGGTCCTCTGCCTGAA
CAGCTAGTACTCTTAACCACAAGCCACTTCTCTAGCTTCTCAGACACTGC
CCCTTACCATAAACACTGAAGTCAGTATAAGCCAGCAAGCATATAACTGT
AGTGTTTACTTAATGTGAAGCACACCTGACTGCTCCCCAAGTGACATATG
AGTGCCTAATTATCTTGTCACCTGGCAAAGGCCACTGCTACTTCTTTAAT
CTTTTGAGTGTGTGATCCAGGTGAAGGTCCACCTCTAAGAGAAGCCTGGC
TCTTCTATATCCTTCTGCCTCTGCCTCTCTCTCTGCCTCTGCCTCTGCCT
CTGCCTTTGCCTCTGATCCTGAAACGACAGGTTAGCTTTAGCCAGTGTTT
TTCATTAGCTTTCTGGGTGGATGTGGAGATGAGCATTGTCAGCATGGCCT
GTCCTCCCAAATCCCAGCTACAGAGCTTAAGTTTAGGGTGTGTTGTTTGC
TTGGATTTTTTTTTGAGACCAGGTTTCTCTGTGTACCCTGGCTATCCTGG
AACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGGCTGCCTTTGCCTC
CTGAGTGCTGGGATTAAAGGTGTGCACCACTGCTGCCATCGGACTTGCAT
GTTTTTTAAATGGAAGAAATAATGTAATAGAATGCTGTTATGTGT

NNNAAAGCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCCTCCTGCCTCCAG
CTCTTAGGTGGTTAATGTCTTTTTATAAAAATTATGTTGGTAGTGGCTGG
AGAGATGAATCAGAGGTTAAAAGCATCCTGCATTGCAGAGGGACCTGGAC
TCAGATGCCAACACTCACAGGGTGGCTCACGACCATTAGTAACTCTAGTT
CTTGGGAATCCTGCATCCTCTGTTGACACTGCATGCTTGTGGTGCATATA
TACACATGGGTGGTGAATATACATACAGGCAGGCAGAACACCCACACACA
TGAAAATAAGTACAGTAATTTGCTGCTGTTGTTGAGGCTGGAGACATAGA
TCAGTGACTAAGAGTACTTACTGTTCTTGGCAGAGGTTGCAAGTTCTGGT
CCCTTGGCAGCTTACAAGTCCCTGTAACTCCAGTTTCAGAAGATCCAGTG
CCCTCTTCTTGCCCTTGCTGCCATTGACACACATGGCACACATGCTCACA
GCTTTGCACGCATTCGCACACAAAGTATTTTTTAGTGTGTGGATGGCAAG
AGTGGAGTTGGGGAGAGCAGTTGGGGGGTCTAGGCTAGAGAACAGTGCCT
GGCTCTGAGAAGTGGCTACAGCTAAGGTATACTTGGAGATCTAGTGTGAC
TGATGGATTGAACCTGAGGAAGAGCAGGGATGCCACTTACATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_k16.b1 MSMg01no516_k16.b1 CHROMAT_FILE:
MSMg01no516_k16.b1 PHD_FILE: MSMg01no516_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:29 2005
         (693 letters)



>mm_chr12_25715572_25716664
          Length = 1093

 Score = 1326 bits (686), Expect = 0.0
 Identities = 689/690 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctggatggctgcgaactgaaccagggtcctctgcctgaacagctagtactctta 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ggaattctggatggctgggaactgaaccagggtcctctgcctgaacagctagtactctta 730

                                                                       
Query: 64  accacaagccacttctctagcttctcagacactgccccttaccataaacactgaagtcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 accacaagccacttctctagcttctcagacactgccccttaccataaacactgaagtcag 670

                                                                       
Query: 124 tataagccagcaagcatataactgtagtgtttacttaatgtgaagcacacctgactgctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tataagccagcaagcatataactgtagtgtttacttaatgtgaagcacacctgactgctc 610

                                                                       
Query: 184 cccaagtgacatatgagtgcctaattatcttgtcacctggcaaaggccactgctacttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cccaagtgacatatgagtgcctaattatcttgtcacctggcaaaggccactgctacttct 550

                                                                       
Query: 244 ttaatcttttgagtgtgtgatccaggtgaaggtccacctctaagagaagcctggctcttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttaatcttttgagtgtgtgatccaggtgaaggtccacctctaagagaagcctggctcttc 490

                                                                       
Query: 304 tatatccttctgcctctgcctctctctctgcctctgcctctgcctctgcctttgcctctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tatatccttctgcctctgcctctctctctgcctctgcctctgcctctgcctttgcctctg 430

                                                                       
Query: 364 atcctgaaacgacaggttagctttagccagtgtttttcattagctttctgggtggatgtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atcctgaaacgacaggttagctttagccagtgtttttcattagctttctgggtggatgtg 370

                                                                       
Query: 424 gagatgagcattgtcagcatggcctgtcctcccaaatcccagctacagagcttaagttta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gagatgagcattgtcagcatggcctgtcctcccaaatcccagctacagagcttaagttta 310

                                                                       
Query: 484 gggtgtgttgtttgcttggatttttttttgagaccaggtttctctgtgtaccctggctat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gggtgtgttgtttgcttggatttttttttgagaccaggtttctctgtgtaccctggctat 250

                                                                       
Query: 544 cctggaactcactctgtagaccaggctggccttgaactcaggctgcctttgcctcctgag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cctggaactcactctgtagaccaggctggccttgaactcaggctgcctttgcctcctgag 190

                                                                       
Query: 604 tgctgggattaaaggtgtgcaccactgctgccatcggacttgcatgttttttaaatggaa 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tgctgggattaaaggtgtgcaccactgctgccatcggacttgcatgttttttaaatggaa 130

                                         
Query: 664 gaaataatgtaatagaatgctgttatgtgt 693
           ||||||||||||||||||||||||||||||
Sbjct: 129 gaaataatgtaatagaatgctgttatgtgt 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_k16.g1 MSMg01no516_k16.g1 CHROMAT_FILE:
MSMg01no516_k16.g1 PHD_FILE: MSMg01no516_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:29 2005
         (609 letters)



>mm_chr12_25541520_25542528
          Length = 1009

 Score = 1178 bits (609), Expect = 0.0
 Identities = 609/609 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatcctcctgcctccagctcttaggtggttaatgtctttttataaaaattatgttggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatcctcctgcctccagctcttaggtggttaatgtctttttataaaaattatgttggt 260

                                                                       
Query: 61  agtggctggagagatgaatcagaggttaaaagcatcctgcattgcagagggacctggact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtggctggagagatgaatcagaggttaaaagcatcctgcattgcagagggacctggact 320

                                                                       
Query: 121 cagatgccaacactcacagggtggctcacgaccattagtaactctagttcttgggaatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatgccaacactcacagggtggctcacgaccattagtaactctagttcttgggaatcc 380

                                                                       
Query: 181 tgcatcctctgttgacactgcatgcttgtggtgcatatatacacatgggtggtgaatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatcctctgttgacactgcatgcttgtggtgcatatatacacatgggtggtgaatata 440

                                                                       
Query: 241 catacaggcaggcagaacacccacacacatgaaaataagtacagtaatttgctgctgttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catacaggcaggcagaacacccacacacatgaaaataagtacagtaatttgctgctgttg 500

                                                                       
Query: 301 ttgaggctggagacatagatcagtgactaagagtacttactgttcttggcagaggttgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaggctggagacatagatcagtgactaagagtacttactgttcttggcagaggttgca 560

                                                                       
Query: 361 agttctggtcccttggcagcttacaagtccctgtaactccagtttcagaagatccagtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttctggtcccttggcagcttacaagtccctgtaactccagtttcagaagatccagtgc 620

                                                                       
Query: 421 cctcttcttgcccttgctgccattgacacacatggcacacatgctcacagctttgcacgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcttcttgcccttgctgccattgacacacatggcacacatgctcacagctttgcacgc 680

                                                                       
Query: 481 attcgcacacaaagtattttttagtgtgtggatggcaagagtggagttggggagagcagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attcgcacacaaagtattttttagtgtgtggatggcaagagtggagttggggagagcagt 740

                                                                       
Query: 541 tggggggtctaggctagagaacagtgcctggctctgagaagtggctacagctaaggtata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggggggtctaggctagagaacagtgcctggctctgagaagtggctacagctaaggtata 800

                    
Query: 601 cttggagat 609
           |||||||||
Sbjct: 801 cttggagat 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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