CTTCTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTGATTACCATAGGTTCTATTTTGTCTAGCCTATGA
ATCAACATCCCTTGACTCTAGCCCCTTGATTATCACAAGAAGACAGCAAG
CATTTTTTTCTTCTTCTTATATTGCAAAGGAATTCAGAGATCTGCCTGCC
TTTATTAAGTACAGACAATAAGCTAGCTGGGTGGGACCCCCACCCTAAAA
TTACCATTCCTACCACACCTGGGCCAAGAACTAAACTTCTGCTGGACCTG
GAAGACCTTAAACTCAGGAATTTGCCTGCCTTTATGAGCAAAAACAAAAC
AAAAGTTGCCCTTCAATCACCACTCCCTCAAGCTATCTTCTTTCTTAGTA
ACATTCTGACAATTTGACTCGCAGTGCAGCTGCCTCTGTTCTTTTAAATC
TGTGAAGCTTCTTACACAATTCACAAGCATCCTCATATTTTTGAAGAATT
GGTAAAGTATATATGTTTGAACTTATATTTTTAGTGTTTATTCCCACAAC
ATTAAGGGCTGTCCTGAAGGTCTCAGCATTTGCCATTTTGCTAAGATATA
GACATACCCTTGCCTCCTGGACTCCTGTTGCTTCTAATTATGATGGAATC
TTTAAAATTAGTTTGAAATTAGTTTGGGCAGACTCACAGGGTTGTAGTTT
CTCTTATTCTAGCATATACGGATGTCCTTGGAAATGGCAAAAGTGC

NNNCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGCCAGGACTAC
ACAGAGAAACCCTGTCTCTAANAACCNNNNNNAANAAAAAAAAAAAAAAA
AAAAGAAGAAGAAGAAGAAGAAGAAAATAAAGAAAAAGTCATTTTCACAT
AAATAAATATATTTTCACTGCATTTCCAATATTTGGGATGCACAAAATAA
TTTTAGGTTAGTTAGAATTATTTATAGAGTCTAGCTGCTTTAGGAATTAA
ATTTATCTCTTTTAATTTCAGTGGAAAAAATGAATTGGGGAAAAAACTCT
CTAATGAAAATTTTCCAATAAACATTAATGCATTAGTCAGAGTTCTCTAA
AGGAACTGAACTTATGGGTAGTCTCTACATAGTAATGGAATTTGTTGATA
ATTTACAAACTGTAGTCCAACTACCCACAATGGTCAGCAGCAGCTGTGAA
TGGAAGTCCAAGGATATAGCAGTAGCTCAGTCCCATAAAGCAAGCAGGCG
AAGCAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGACAAGGTGTGGCCAGATTAAAGATGTGTGTCACCAC
ACCTTGATCTGGGACTTGCTTTGTCCCAAATGAACTTGATCTCAAAGGTC
TCCCTGGCTTAATCTTCTGGGGATCATAGNCACTATGTCTCAACATCTCC
ATG

Query= MSMg01no516_o11.g1 MSMg01no516_o11.g1 CHROMAT_FILE:
MSMg01no516_o11.g1 PHD_FILE: MSMg01no516_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:48 2005
         (486 letters)



>mm_chr12_96113204_96114089
          Length = 886

 Score =  828 bits (428), Expect = 0.0
 Identities = 440/444 (99%)
 Strand = Plus / Minus

                                                                       
Query: 33  aagaagaaaataaagaaaaagtcattttcacataaataaatatattttcactgcatttcc 92
           |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 463 aagaagaaaaaaaagaaaaagtcattttcacataaataaatatattttcactccatttcc 404

                                                                       
Query: 93  aatatttgggatgcacaaaataattttaggttagttagaattatttatagagtctagctg 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aatatttgggatgcacaaaataattttaggttagttagaattatttatagagtctagctg 344

                                                                       
Query: 153 ctttaggaattaaatttatctcttttaatttcagtggaaaaaatgaattggggaaaaaac 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctttaggaattaaatttatctcttttaatttcagtggaaaaaatgaattggggaaaaaac 284

                                                                       
Query: 213 tctctaatgaaaattttccaataaacattaatgcattagtcagagttctctaaaggaact 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tctctaatgaaaattttccaataaacattaatgcattagtcagagttctctaaaggaact 224

                                                                       
Query: 273 gaacttatgggtagtctctacatagtaatggaatttgttgataatttacaaactgtagtc 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gaacttatgggtagtctctacatagtaatggaatttgttgataatttacaaactgtagtc 164

                                                                       
Query: 333 caactacccacaatggtcagcagcagctgtgaatggaagtccaaggatatagcagtagct 392
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 163 caactacccacaatggtcagcagcagctgtgaatggaagtccaaggatatagcagttgct 104

                                                                       
Query: 393 cagtcccataaagcaagcaggcgaagcaaagagagagagagagagagagagagagagaga 452
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 103 cagtcccataaagcaagcaggcgaagcagagagagagagagagagagagagagagagaga 44

                                   
Query: 453 gagagagagagagagagagagaga 476
           ||||||||||||||||||||||||
Sbjct: 43  gagagagagagagagagagagaga 20


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 111
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)