BAC Information

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BAC

Clone NameMSMg01-518E07
Chromosome12 (Build37)
Map Location 115,251,178 - 115,328,180
singlet/doubletdoublet
Overlap geneIgh, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2
Upstream genePacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2
Downstream geneIghv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518E07.T7 (MSMg01no518_e07.b1)MSMg01-518E07.TJ (MSMg01no518_e07.g1)
ACCAG589817AG589818
length748756
length of high quality
(start - end)		632 (50 - 681)675 (79 - 753)
definitionCHROMAT_FILE: MSMg01no518_e07.b1 PHD_FILE: MSMg01no518_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:37 2005CHROMAT_FILE: MSMg01no518_e07.g1 PHD_FILE: MSMg01no518_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:37 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(115,251,178 - 115,251,805)(115,327,506 - 115,328,180)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTAGAAACTAAGAAAAAAGGCTGCCAAGATACATGAGAGGA
CTGCTTTCTTGTGTCTTATTTCCTGGGGTGATCCTGTGTTCTGTGTCTGG
TTTTCATCGCCCCCTGGTGGTTGTGAGCGGCCTCACAATGAGGTTCATGT
CTGGGTAAAAACTGAGATTTCCTCACTGTGGGTCTTGCACAGTAATAAAG
GGCTGTGTCCTCAGATCTCACTTTGCTCATTTGCAGGTACAGCGTATTTT
TGGCGTTGTCTCTGGAGATGATGAATTTATCCTTTAGAGATGGAGTATAG
TTTATCGTACTGCTACCTGGATTAATTTCTCCAATTCATTCTAGCCCTTT
CCCTGTAGCCTGCCGGACCCAACTCATCCAGTCTTTACTAAAATCGAATC
CTGAGGCTGCACAGGAGAGTTTCAGGGATCCTCCAGGCTGCACCAGGCCA
CCTCCAGACTCGAGAAGCTTCACCTCACACTGGACCCCTGAAAACACAGA
GAATTCTGTCAGCAAACTGCCATACAGGCTCACCATCTATCTTGCTCATG
ACCAGTAACACACTCAGTATCTCTTTTCCATGAATTACCTTTTAAAAGAG
CAACAATAAAAAAAATCAGCCCAAAATCCATGGTAAGGGATGTTTGTTCA
GTGTTGATCACCTGAATGAGAATCTCGGGCTGATCCCCTTTGCTTCTA

GGCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTCTATAAATCATTAACAA
GACAAATTCTTTACCCTGACTATTACTCACCTCAAGGTTTCTACTTGCTT
GTCAGTCTATAGCAGCAGGATACACAAATAGGGCTAGACTATGACTATTA
AATCCAGTTTAACACTGACCCTGTAGCTCTGGCAGAAGAGTCCAAATTTA
GATTCCCATGTTCCCATTCTGTGATTATCACTGGCAGTAGTTATTATTAG
GAGGATCAGTGCACATCTCTTTGAGTACCTAGACCAGAATTATATGTATT
TATAGGTGTATAATATGAGTTGCAGCTTATGGAGTCTTGGGGAAGCTTGT
TAAAGCTCCAGGGTTCTGTAAGACATTCTTGTGCAGCCGCTGGATTCACT
TTCAGAGAATACTATATCAGATGGGTCCTGTAGATTTTAGAAAAAGATCT
TGAGTCCTTGATTTAATTACAAACACAGCTGGGGGGTGATTACAGAGTAT
GCTTCCTATGTGAGAAGGGCACTTCCCATTTCAAGAGATCATACAAAAAA
TAAAATTTCATGCCTCCAAATAAACAGATTGGAGACTTCTTTTTTCCCTG
AGAAGAAATGGAGAAGGCAACTGGGGAGGGATCAATAAGGGCTTGAGTAG
GAGCAGAGAAGGGATTGAGATATAATGTGAGTAAAAAATTAAATAAGGGA
GAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_e07.b1 MSMg01no518_e07.b1 CHROMAT_FILE:
MSMg01no518_e07.b1 PHD_FILE: MSMg01no518_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:37 2005
         (632 letters)



>mm_chr12_115250974_115252005
          Length = 1032

 Score = 1214 bits (628), Expect = 0.0
 Identities = 628/628 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctagaaactaagaaaaaaggctgccaagatacatgagaggactgctttcttgtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctagaaactaagaaaaaaggctgccaagatacatgagaggactgctttcttgtg 264

                                                                       
Query: 65  tcttatttcctggggtgatcctgtgttctgtgtctggttttcatcgccccctggtggttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttatttcctggggtgatcctgtgttctgtgtctggttttcatcgccccctggtggttg 324

                                                                       
Query: 125 tgagcggcctcacaatgaggttcatgtctgggtaaaaactgagatttcctcactgtgggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagcggcctcacaatgaggttcatgtctgggtaaaaactgagatttcctcactgtgggt 384

                                                                       
Query: 185 cttgcacagtaataaagggctgtgtcctcagatctcactttgctcatttgcaggtacagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgcacagtaataaagggctgtgtcctcagatctcactttgctcatttgcaggtacagc 444

                                                                       
Query: 245 gtatttttggcgttgtctctggagatgatgaatttatcctttagagatggagtatagttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtatttttggcgttgtctctggagatgatgaatttatcctttagagatggagtatagttt 504

                                                                       
Query: 305 atcgtactgctacctggattaatttctccaattcattctagccctttccctgtagcctgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcgtactgctacctggattaatttctccaattcattctagccctttccctgtagcctgc 564

                                                                       
Query: 365 cggacccaactcatccagtctttactaaaatcgaatcctgaggctgcacaggagagtttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cggacccaactcatccagtctttactaaaatcgaatcctgaggctgcacaggagagtttc 624

                                                                       
Query: 425 agggatcctccaggctgcaccaggccacctccagactcgagaagcttcacctcacactgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agggatcctccaggctgcaccaggccacctccagactcgagaagcttcacctcacactgg 684

                                                                       
Query: 485 acccctgaaaacacagagaattctgtcagcaaactgccatacaggctcaccatctatctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acccctgaaaacacagagaattctgtcagcaaactgccatacaggctcaccatctatctt 744

                                                                       
Query: 545 gctcatgaccagtaacacactcagtatctcttttccatgaattaccttttaaaagagcaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gctcatgaccagtaacacactcagtatctcttttccatgaattaccttttaaaagagcaa 804

                                       
Query: 605 caataaaaaaaatcagcccaaaatccat 632
           ||||||||||||||||||||||||||||
Sbjct: 805 caataaaaaaaatcagcccaaaatccat 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_e07.g1 MSMg01no518_e07.g1 CHROMAT_FILE:
MSMg01no518_e07.g1 PHD_FILE: MSMg01no518_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:37 2005
         (675 letters)



>mm_chr12_115327306_115328380
          Length = 1075

 Score = 1305 bits (675), Expect = 0.0
 Identities = 675/675 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtctataaatcattaacaagacaaattctttaccctgactattactcacctcaaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 actgtctataaatcattaacaagacaaattctttaccctgactattactcacctcaaggt 816

                                                                       
Query: 61  ttctacttgcttgtcagtctatagcagcaggatacacaaatagggctagactatgactat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ttctacttgcttgtcagtctatagcagcaggatacacaaatagggctagactatgactat 756

                                                                       
Query: 121 taaatccagtttaacactgaccctgtagctctggcagaagagtccaaatttagattccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 taaatccagtttaacactgaccctgtagctctggcagaagagtccaaatttagattccca 696

                                                                       
Query: 181 tgttcccattctgtgattatcactggcagtagttattattaggaggatcagtgcacatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgttcccattctgtgattatcactggcagtagttattattaggaggatcagtgcacatct 636

                                                                       
Query: 241 ctttgagtacctagaccagaattatatgtatttataggtgtataatatgagttgcagctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ctttgagtacctagaccagaattatatgtatttataggtgtataatatgagttgcagctt 576

                                                                       
Query: 301 atggagtcttggggaagcttgttaaagctccagggttctgtaagacattcttgtgcagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 atggagtcttggggaagcttgttaaagctccagggttctgtaagacattcttgtgcagcc 516

                                                                       
Query: 361 gctggattcactttcagagaatactatatcagatgggtcctgtagattttagaaaaagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gctggattcactttcagagaatactatatcagatgggtcctgtagattttagaaaaagat 456

                                                                       
Query: 421 cttgagtccttgatttaattacaaacacagctggggggtgattacagagtatgcttccta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cttgagtccttgatttaattacaaacacagctggggggtgattacagagtatgcttccta 396

                                                                       
Query: 481 tgtgagaagggcacttcccatttcaagagatcatacaaaaaataaaatttcatgcctcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgtgagaagggcacttcccatttcaagagatcatacaaaaaataaaatttcatgcctcca 336

                                                                       
Query: 541 aataaacagattggagacttcttttttccctgagaagaaatggagaaggcaactggggag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aataaacagattggagacttcttttttccctgagaagaaatggagaaggcaactggggag 276

                                                                       
Query: 601 ggatcaataagggcttgagtaggagcagagaagggattgagatataatgtgagtaaaaaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggatcaataagggcttgagtaggagcagagaagggattgagatataatgtgagtaaaaaa 216

                          
Query: 661 ttaaataagggagaa 675
           |||||||||||||||
Sbjct: 215 ttaaataagggagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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