Query= MSMg01no518_l03.b1 MSMg01no518_l03.b1 CHROMAT_FILE:
MSMg01no518_l03.b1 PHD_FILE: MSMg01no518_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:10 2005
(699 letters)
>mm_chr12_61905044_61906138
Length = 1095
Score = 955 bits (494), Expect = 0.0
Identities = 549/580 (94%), Gaps = 21/580 (3%)
Strand = Plus / Minus
Query: 5 gaattctcactccagagagtcagaaagccactttggactttgctggcatctgcattcaca 64
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 577 gaattctcactccagagagtcagaaaaccactttggactttgctggcatctgcattcaca 518
Query: 65 aatgtacaaatccacatgtagaaccattcatacacatagttaaaaataacataaatgaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aatgtacaaatccacatgtagaaccattcatacacatagttaaaaataacataaatgaat 458
Query: 125 aatttaaaaatataattgttctattattgttcatatgtgtgtgtgtgtgtgccagtgcct 184
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 457 aatttaaaaatataattgttctattattgttcata----tgcgtgtgtgtgccagtgcct 402
Query: 185 attgaggccttctgctaaagagggcatgtactctgcctctaagccatctattcaatgaca 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 attgaggccttctgctagagagggcatgtactctgcctctaagccatctattcaatgaca 342
Query: 245 aaaaattaaatcttaagcaataactgtcatttatatctgctggaagacagaaaatcagtt 304
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaaaattaaatcttaaggaataactgtcatttatatctgctggaagacagaaaatcagtt 282
Query: 305 ttctccaaaggagtaacattgaatatgtcagctacggtaatacaggactcatattcagga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttctccaaaggagtaacattgaatatgtcagctacggtaatacaggactcatattcagga 222
Query: 365 gtacttggctaatatataacggatttggttctcttgaattcttttattggtttacagatt 424
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 221 gtacttggctaatatataacggatttggttttcttgaattcttttattggtttacaggtt 162
Query: 425 tgtaggttttcttcctcttcttggggtttctttt-----------------acattgttt 467
|||||||||||||||||| ||||| |||| |||| |||||||||
Sbjct: 161 tgtaggttttcttcctctccttggagtttttttttttttttttttttttttacattgttt 102
Query: 468 tcttggttgggtgtttgttgttgtattgggtctttgtgtttttgaaaaagaacttaatgt 527
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 tcttggttgggtggttgttgttgtattgggtctttgtgtttttgaaaaagaacttaatgt 42
Query: 528 cagatgagtgaagaggggagaggatctggaaaaacttggg 567
||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 cagatgagtgaagaggggagaggatctggaaaaacttggg 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1095
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1085
Effective search space: 747565
Effective search space used: 747565
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_l03.g1 MSMg01no518_l03.g1 CHROMAT_FILE:
MSMg01no518_l03.g1 PHD_FILE: MSMg01no518_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:10 2005
(680 letters)
>mm_chr12_61884496_61885576
Length = 1081
Score = 1207 bits (624), Expect = 0.0
Identities = 666/682 (97%), Gaps = 7/682 (1%)
Strand = Plus / Plus
Query: 5 attgaca-gggttgaggaggtggaacgggagtatcttcaggatgagacagagactttgga 63
||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 attgacatggg-tgaggaggtggaacaggagtatcttcaggatgagacagagactttgga 259
Query: 64 gaagagaggttcccaaaaatacatgggttgaccttagctgtggggatatggaaactgcta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaagagaggttcccaaaaatacatgggttgaccttagctgtggggatatggaaactgcta 319
Query: 124 aggccacctcctctagtcaggcctgaacaccaatggagtgagagacaccaatctaccaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggccacctcctctagtcaggcctgaacaccaatggagtgagagacaccaatctaccaat 379
Query: 184 aaaatattcaatccaaaacttatcttgtctacaagaaatgcatgtactgggtggaacaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaatattcaatccaaaacttatcttgtctacaagaaatgcatgtactgggtggaacaga 439
Query: 244 ga----catatatggcttttgatttgaggactgttccctttagcttacagaccatgccct 299
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagagacatatatggcttttgatttgaggactgttccctttagcttacagaccatgccct 499
Query: 300 acagccctaacaatacatgtgcctcacagctttttggttttatcaatctctattggtgta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acagccctaacaatacatgtgcctcacagctttttggttttatcaatctctattggtgta 559
Query: 360 cagttgtttataacaatctctaatgagcctttcttatttctgcgatttcacttgttgtat 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 560 cagttgtttataacaatctctaatgagcctttcttatttctgtgatttcacttgtagtat 619
Query: 420 tttatctttcttttttaatttttagtttagttttggttcattaacagaagttttgccaac 479
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 620 tttatctttcttttttaatttttagtttctttttggttcattaacagaagttttgccaac 679
Query: 480 ttttttt-cagttttgacctgctctttgtttcactggacttttttttactgttttgaatt 538
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttttttttcaattttgacctgctctttgtttcactggacttttttttactgttttgaatt 739
Query: 539 ccattttgcttatctgtacttatcattattgaacattatgtttgtgattcatgtgttctt 598
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 740 ccattttgcttatctgtacttatcattattggacattatgtttgtgattcatgtgttctt 799
Query: 599 gtccactaaattgcctctccagccctctgaacattttacttatttatatttaagaataat 658
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 800 gtccactaaattgcctctccagccctctgaatattttacttatttatatttaagaataat 859
Query: 659 tatatatgtaatacatatatat 680
||||||| ||||||||||||||
Sbjct: 860 tatatatataatacatatatat 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space: 717570
Effective search space used: 717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
