Query= MSMg01no519_a15.b1 MSMg01no519_a15.b1 CHROMAT_FILE:
MSMg01no519_a15.b1 PHD_FILE: MSMg01no519_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:38 2005
(694 letters)
>mm_chr12_4322367_4323460
Length = 1094
Score = 1282 bits (663), Expect = 0.0
Identities = 669/671 (99%)
Strand = Plus / Minus
Query: 24 atactgcttttacagaagtgccaggtttgattcttagcacctacatcaagtggcacaacc 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 atactgcttttacagaagtgccaggtttgattcttagcacctacatcaagtggcacaacc 1035
Query: 84 acttataacagttgtaggacatccagcctctctgtactccaagggcatctgcactcatgt 143
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1034 acttataacagttataggacatccaacctctctgtactccaagggcatctgcactcatgt 975
Query: 144 gtgcacactcaagtatatgtgcacacatatatacatacacacttaaaataataaaaaaat 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 gtgcacactcaagtatatgtgcacacatatatacatacacacttaaaataataaaaaaat 915
Query: 204 ttaaataaaattgtttttaagaaagaccgttgattgtttttcattcatacctattgtact 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ttaaataaaattgtttttaagaaagaccgttgattgtttttcattcatacctattgtact 855
Query: 264 tgaaaattatgacccaccccacagagagccactcagcattttagcttgacatatatttat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tgaaaattatgacccaccccacagagagccactcagcattttagcttgacatatatttat 795
Query: 324 ttctagtatctttttaaagagaaaaaagttttccttttatcttttaaccactcaatattt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ttctagtatctttttaaagagaaaaaagttttccttttatcttttaaccactcaatattt 735
Query: 384 taaccagtgccttcatgtcttaatccttttctttcttttatttttggctttgcaggcttt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 taaccagtgccttcatgtcttaatccttttctttcttttatttttggctttgcaggcttt 675
Query: 444 ggatggatttttctttgttgtgaactgtgaaggaagaattgtatttgtatcagaaaatgt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggatggatttttctttgttgtgaactgtgaaggaagaattgtatttgtatcagaaaatgt 615
Query: 504 gaccagctacttgggttacaatcaggaagaattaatgaataccagcgtctacagcatact 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaccagctacttgggttacaatcaggaagaattaatgaataccagcgtctacagcatact 555
Query: 564 gcatgtgggagatcatgcagaatttgtcaagaatctgctaccaaaatcactaggtagaat 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gcatgtgggagatcatgcagaatttgtcaagaatctgctaccaaaatcactaggtagaat 495
Query: 624 taactttttatttctaatacttagtattattacatatgcaagttaatagtgtgaaataat 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 taactttttatttctaatacttagtattattacatatgcaagttaatagtgtgaaataat 435
Query: 684 atccttgaaat 694
|||||||||||
Sbjct: 434 atccttgaaat 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_a15.g1 MSMg01no519_a15.g1 CHROMAT_FILE:
MSMg01no519_a15.g1 PHD_FILE: MSMg01no519_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:38 2005
(671 letters)
>mm_chr12_4157218_4158288
Length = 1071
Score = 1187 bits (614), Expect = 0.0
Identities = 661/686 (96%), Gaps = 15/686 (2%)
Strand = Plus / Plus
Query: 1 cagtgttccatgcagtcctacacattactgggaccctcatttggaaatatgcaatactta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cagtgttccatgcagtcctacacattactgggaccctcatttggaaatatgcaatactta 245
Query: 61 aattggaaacagattatgttttcctaagtttgactttaagcagctccacttcttcttaaa 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 246 aattggaaacagattatgttttcctaagtttgactttaagcagatccacttcttcttaaa 305
Query: 121 cctctatcagctctgcattctaaaaaaagagtaaatcctgtgctgacatgggtgtctggg 180
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cttctatcagctctgctttctaaaaaaagagtaaatcctgtgctgacatgggtgtctggg 365
Query: 181 tgacagtaagtgacagatgactggccaggtggattgtgtgcctgggctttgtctgaacat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 366 tgacagtaagtgacagatgactggccaggtggattgtgtgcctgggctttgtctgagcat 425
Query: 241 cctggcaggctcccctctgttgccaggcccttgcagcctgtgccaggagttgaggtatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 426 cctggcaggctcccctctgttgccaggcccttgcagcctgtgccaggagttgaggtacgg 485
Query: 301 gcagtgaaatggtgacatttttggcatacccgatgggctagatgtggaggctgtggaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gcagtgaaatggtgacatttttggcatacccgatgggctagatgtggaggctgtggaggg 545
Query: 361 agaaacttgctgagaaaaggtgctcagctctgaatcctggagattctgcctggttggggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agaaacttgctgagaaaaggtgctcagctctgaatcctggagattctgcctggttggggg 605
Query: 421 agagggtggagggtcttcccaatagaaggaaatttccacagttggagtctctatcctgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agagggtggagggtcttcccaatagaaggaaatttccacagttggagtctctatcctgac 665
Query: 481 aagtcttcaggctgccgttggtcagtggagaatttcagtgggactgcagattcattccag 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 666 aagtcttcaggctgccgttggtcagtggggaatttcagtgggactgcagattcattccag 725
Query: 541 aaagattacaaggcagaggggaagagtggagggagaggaaaggaag-------------- 586
|||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 726 aaagattacaaggcagaggggaagagcggagggagaggaaaggaagggagaggaaaggaa 785
Query: 587 -cccgtcttgaaataccccatcttccgcacaaggtggcccctgtggtattctactcttgg 645
|| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 786 gccggtcttgaaataccccatcttccgcacaaggtggtccctgtggtgttctactcttgg 845
Query: 646 cccatttcatttctacagctgtgtga 671
||||||||||||||||||||||||||
Sbjct: 846 cccatttcatttctacagctgtgtga 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
