NNTTAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCNGGAATTCCCACTTGTACAACACCTGTACTACACATAGAAACAA
TATCAATATGAAGAACTTCATTGATATCTAATATCGAAGACATGAACTTT
TACTACTTAACAACAAAGACTATTCCTTAAGGACAAAGGCTAGGTGAATT
TTTGATAATTGTAATTCCCACGATCCTTAAGAAAAAAATATTTTTTATTT
TGCAATGAGAGTTTTTGCTACTCTTAATAGTACTCAAGGTAATATATTTT
GTATGTTTCCTGTTTTTAATACAACTTTCTCCACAGAGTCCAACCAGTTA
TTATTAGCAATAGTTGTTCATTAGTATTTATATTGTCACAGGCAGTGCTA
GCTTATTATTTTGTCTCTAGTCATTTTACTTAATTCTTTAACAAACTCTG
AGATAATGACCATGATTCTGATTCACTAATCTATTAGTTCATTTTATCTT
GCTAATAACACAGTATCACAGATTGGGCAAATTACAAAAAAAAAAATCAT
CTCACAGTTCCTTGGTGCAGGAGTTTTTGCCTACAGTATCACATAGGAGA
TACTATACATATACTACATATTATATGTATATACTATACATATACATATA
CTATACAGTATCACATAGGAGATACTATAGGAGCACACATGCGTGAAAAT
GTATCTCTGTATTCAGATGTGTTCTAGTCTCAA

ATGGCACTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAACCCAAATG
GCTGAGAAACACCTGAAAAATGTTCAGCATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCATCTCACACCCTTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGA
TCCCACAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTA
AGAAGAACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAGCCAGA
AGCTGGAAAGAATCCAGATGCCTCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACAAAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACCCAATCACAAAAGAACTCACATGATATGTACTTACTGATAAG
TGGATATTAGCCCAGAAACTTAGAATACCCAAGATACAAGATACAATTTG
CAAAACACATGAAACTCAAGAAGAACAAAG

Query= MSMg01no520_k13.b1 MSMg01no520_k13.b1 CHROMAT_FILE:
MSMg01no520_k13.b1 PHD_FILE: MSMg01no520_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:46 2005
         (608 letters)



>mm_chr12_98558697_98559706
          Length = 1010

 Score =  963 bits (498), Expect = 0.0
 Identities = 585/618 (94%), Gaps = 12/618 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatatctaatatcgaagacatgaacttttactacttaacaacaaagactattccttaag 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatatctaatatcgaagacatgaatttttactacttaacaacaaagactattccttaag 260

                                                                       
Query: 61  gacaaaggctaggtgaatttttgataattgtaattcccacgatccttaagaaaaaaatat 120
           |||||||||||||||||||||||||| || || |||||| |||||||||||||||| |||
Sbjct: 261 gacaaaggctaggtgaatttttgatagttatatttcccatgatccttaagaaaaaa-tat 319

                                                                       
Query: 121 tttttattttgcaatgagagtttttgctactctta-atagtactcaaggtaatatatttt 179
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 320 tttttattttgcaatgagagtttttgctattcttatatagtactcaaggtaatatatttt 379

                                                                       
Query: 180 gtatgtttcctgtttttaatacaactttctccacagagtccaaccagttattattagc-a 238
           ||||||||||||||  |||||||| |||||||||||||| |||||||||||||||| | |
Sbjct: 380 gtatgtttcctgttgctaatacaattttctccacagagttcaaccagttattatta-cta 438

                                                                       
Query: 239 atagttgttcattagtatttatattgtcacaggcagtgctagcttattattttgtctcta 298
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atagttgttaattactatttatattgtcacaggcagtgctagcttattattttgtctcta 498

                                                                       
Query: 299 gtcattttacttaattctttaacaaactctgagataatgaccatgattctgattcactaa 358
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 499 gtcattttacttaattctttaacaaactatgagataatgaccatgattctgattcacaaa 558

                                                                       
Query: 359 tctattagttcattttatcttgctaataacacagtatcacagattgggcaaattacaaaa 418
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 559 tctattagttcattttatcttgctaataacacaatatcacagattgggcaaattacaaaa 618

                                                                       
Query: 419 aaaaaaat--catctcacagttccttggtgcaggagtttttgcctacagtatcacatagg 476
           ||||  ||  |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 619 aaaatcatttcatctcacagttccttggtgcaggagttcttgcctacagtatcacatagg 678

                                                                       
Query: 477 agatactatacatatac------tacatattatatgtatatactatacatatacatatac 530
           |||||||||||||||||      |||||| ||||||||||||||||||||||||||||||
Sbjct: 679 agatactatacatatacatatagtacatactatatgtatatactatacatatacatatac 738

                                                                       
Query: 531 tatacagtatcacataggagatactataggagcacacatgcgtgaaaatgtatctctgta 590
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 739 gatacagtatcacataggagatactataggagcacacatgcgtgaaaatgtatctatgta 798

                             
Query: 591 ttcagatgtgttctagtc 608
           ||||||||||||||||||
Sbjct: 799 ttcagatgtgttctagtc 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1010
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1000
Effective search space:   598000
Effective search space used:   598000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)