BAC Information

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BAC

Clone NameMSMg01-521O11
Chromosome12 (Build37)
Map Location 69,381,980 - 69,382,361
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040745, LOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521O11.T7 (MSMg01no521_o11.b1)MSMg01-521O11.TJ (MSMg01no521_o11.g1)
ACCAG592588AG592589
length734738
length of high quality
(start - end)
67 (238 - 304)382 (199 - 580)
definitionCHROMAT_FILE: MSMg01no521_o11.b1 PHD_FILE: MSMg01no521_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:22 2005CHROMAT_FILE: MSMg01no521_o11.g1 PHD_FILE: MSMg01no521_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTTATCATTATTGTTGGCGTCTAAACTATTTCTTTTTCTAGAGATCCGT
GTAATTCATTTTTTTTACCAAGGGCCTTGAAAACTATGTTTTTGGCTGCT
ATAGTCAAATGTGTTTTACTGTAACTTAAAATTAGTCAGAAAGAACATAT
GTAGCTTTGTTTTAAACCCTATTGTTATGGGAACAGAACAACCCTCACTG
TAGGGATAATAGCTTAACCCTCAGTATAGGAGCAATAGTTCCATAGATGC
ATAAAACTCTCTGTGGGGTTTTATCTTTTGTTCTTTGCGTGCTATGGTCT
TTGCTCTTTGATACAAAGATGAACATTTTTTATATTTTTATTACATATTT
TCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATATCCTACCC
CCCCAAACTTCCCTACCCACCCATTCCCATTTTTTTTTGACACTGGCATT
CACCTGTACTGGGGCATATAAAGTTTGTGTGTTCAATGGGCCTCTCTTTC
CAGTGATGGTCAATTAGGCCATCTTTTGATACATATGCAGTTAGAGTCCA
GAGTGCTGGTGAACTGGTTATTTCATAATGTTGTTCCACCTATAGGGTTG
CAAATCCCTTTAGCTCCCCGGCTACTTCCTCTAGTTCCTCATTTGGCAGC
CCTGTGATCCATTCTCTAGCTGATTGTGCACTCTCCACTTCTGCGCTTTG
CATTCCTCTGTCCTATTTTCCTATGTTCACATTG
CCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATATCTGAGAGTATTTTGCATAGCT
GGGAAGACAGTCATGTTAATATTAAAATAGACCCTTCTGTTTTCAGCTAC
ACTGGGTAGCAGCAAAATCAGTCACAGTGAAAAGCTTAGGTCTGATACAT
ACTATCTTTGGTTAAGTTAAACATAATATGAAGAAAAGAAACAAAATCAG
TGTAATGAAAACTTGGGACATCATGTCAAAAACAATTGGGAAATAAAGAA
ATGGTAAGATCTGAGCAACAAATTTGCAGTCTGAGATAAAACTTCCGCAG
AAGAAATGACCAATAGGATACAGCAAACTAGAGCCTAGTGAGACTCTTTA
CCTATGGGGGGAGGTGATAAGGAGGTGAAAATAATAGACATATAGGGAAA
GACTGAGTGAGGTTTCATATAAGATTCTGAACACAAATGGCGGCCTTTGG
CCATCTTCCCAGCTGTCAGCAGTAACTGCCTCTGGAACCTGAAATAAATG
GAGATGTCTTTTTCTTATCACTAACCCTACAGAGTATATAAAGCACTGAG
ATAATGACATCTATGATTCATACAATATTTTGAAACACATGACTGGCCTC
ATCTTATGTAATCTTAACAAAGTTCTTTGAATCTCATAGATTTCTAGGGA
GCATAGAAGCACAAAATCAAGGACCCATCTTTATAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_o11.g1 MSMg01no521_o11.g1 CHROMAT_FILE:
MSMg01no521_o11.g1 PHD_FILE: MSMg01no521_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:22 2005
         (382 letters)



>mm_chr12_69381780_69382561
          Length = 782

 Score =  739 bits (382), Expect = 0.0
 Identities = 382/382 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactatctttggttaagttaaacataatatgaagaaaagaaacaaaatcagtgtaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atactatctttggttaagttaaacataatatgaagaaaagaaacaaaatcagtgtaatga 260

                                                                       
Query: 61  aaacttgggacatcatgtcaaaaacaattgggaaataaagaaatggtaagatctgagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacttgggacatcatgtcaaaaacaattgggaaataaagaaatggtaagatctgagcaa 320

                                                                       
Query: 121 caaatttgcagtctgagataaaacttccgcagaagaaatgaccaataggatacagcaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaatttgcagtctgagataaaacttccgcagaagaaatgaccaataggatacagcaaac 380

                                                                       
Query: 181 tagagcctagtgagactctttacctatggggggaggtgataaggaggtgaaaataataga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagagcctagtgagactctttacctatggggggaggtgataaggaggtgaaaataataga 440

                                                                       
Query: 241 catatagggaaagactgagtgaggtttcatataagattctgaacacaaatggcggccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catatagggaaagactgagtgaggtttcatataagattctgaacacaaatggcggccttt 500

                                                                       
Query: 301 ggccatcttcccagctgtcagcagtaactgcctctggaacctgaaataaatggagatgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccatcttcccagctgtcagcagtaactgcctctggaacctgaaataaatggagatgtc 560

                                 
Query: 361 tttttcttatcactaaccctac 382
           ||||||||||||||||||||||
Sbjct: 561 tttttcttatcactaaccctac 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)