Query= MSMg01no522_j13.b1 MSMg01no522_j13.b1 CHROMAT_FILE:
MSMg01no522_j13.b1 PHD_FILE: MSMg01no522_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:14 2005
(641 letters)
>mm_chr12_59685702_59686740
Length = 1039
Score = 1201 bits (621), Expect = 0.0
Identities = 631/635 (99%), Gaps = 2/635 (0%)
Strand = Plus / Plus
Query: 7 gaattcctcctattgtcaagtctgactatgcttattgatctcgagtaacatcacaaaaaa 66
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcctcctattgtaaagtctgactatgcttattgatctcgagtaacatcacaaaaaa 266
Query: 67 aaaaaaggactagaaagaacagagtccaggcaggctcagacagagcagggcaaattggag 126
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaaa--ggactagaaagaacagagtccaggcaggctcagacagagcagggcaaattggag 324
Query: 127 aagaaatctgaaaatggatcccctaaagacaattagcttaattgtttccatgggcatcca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagaaatctgaaaatggatcccctaaagacaattagcttaattgtttccatgggcatcca 384
Query: 187 ctgaattctgtgcctattgatcagctttcctgataattagactaaacgacctggaccatc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgaattctgtgcctattgatcagctttcctgataattagactaaacgacctggaccatc 444
Query: 247 tctatacaatcacttgcattctaccgagcacatagttagttcctcttgtcttttgatatg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctatacaatcacttgcattctaccgagcacatagttagttcctcttgtcttttgatatg 504
Query: 307 gattcagcttttatgtcacaggctggaggcaattcttttgatatttaaaatagaaaaggc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gattcagcttttatgtcacaggctggaggcaattcttttgatatttaaaatagaaaaggc 564
Query: 367 aaatatatgagttaccatctttgagagaagaaatagatgaagaaaatcaaatatgagtcg 426
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatatatgagttaccatcttcgagagaagaaatagatgaagaaaatcaaatatgagtcg 624
Query: 427 tttaataagtttcctctattctgaaattctaaaatcctatactctgtctctaataattta 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttaataagtttcctctattctgaaattctaaaatcctatactctgtctctaataattta 684
Query: 487 tttatagctatacacagacttcaagtttagctttgaaggacacatttgaagaaggcgaaa 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttatagctatacacagacttcaagtttagctttgaaggacacatttgaagaaggcgaaa 744
Query: 547 cttgtgctttcccagaaaaacaaagtaatttttaattgttgaacttgcagggaaactcct 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttgtgctttcccagaaaaacaaagtaatttttaattgttgaacttgcagggaaactcct 804
Query: 607 gattaactgataattaaagaaacttaatatatgga 641
|||||||||||||||||||||||||||||||||||
Sbjct: 805 gattaactgataattaaagaaacttaatatatgga 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1039
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1029
Effective search space: 649299
Effective search space used: 649299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_j13.g1 MSMg01no522_j13.g1 CHROMAT_FILE:
MSMg01no522_j13.g1 PHD_FILE: MSMg01no522_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:14 2005
(603 letters)
>mm_chr12_59867227_59868230
Length = 1004
Score = 1100 bits (569), Expect = 0.0
Identities = 595/607 (98%), Gaps = 7/607 (1%)
Strand = Plus / Minus
Query: 1 tctagttgccttaaagcaacagcttaaaatggcacagcttgtcttagaagaattcattaa 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tctagttgccttaaagcaacaccttaaaatggcacagcttgtcttagaagaattcattaa 745
Query: 61 gtggcaataatttttcagtggagaaacagcctaaaagaaatagatcttatgctgtggctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtggcaataatttttcagtggagaaacagcctaaaagaaatagatcttatgctgtggctt 685
Query: 121 aagagctaggccactgagaaacaaaattgttccattctgatccttgaatcctgcccccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagagctaggccactgagaaacaaaattgttccattctgatccttgaatcctgcccccca 625
Query: 181 cacccctgctgccgctgactgaccacaaggaggtatagtccattgaagagcaatgacctt 240
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 624 caccc---ctgccgctgactgaccacaaggaggtatagtccattggagagcaatgacctt 568
Query: 241 tgaagttgtcactgttcaaaacattcttcctcccgcctcctctttgtagcttttttgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgaagttgtcactgttcaaaacattcttcctcccgcctcctctttgtagcttttttgaaa 508
Query: 301 cattcttcaccaatg----ctgagtccccctcttcccttaattacttcttgataaatcaa 356
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cattcttcaccaatgctaactgagtccccctcttcccttaattacttcttgataaatcaa 448
Query: 357 tcttccaaaagtagggcacgagcatttaaataccatgtatccagtctcattaccgatgga 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcttccaaaagtagggcacgagcatttaaataccatgtatccagtctcattaccgatgga 388
Query: 417 aaaaatctagagacttcagacgcgtgggactgaactttaaagacactggctcctatgaaa 476
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaaaatctagagacttcagatgtgtgggactgaactttaaagacactggctcctatgaaa 328
Query: 477 atgtacgtctatatatacagtctgtggagaattctctggaactccagatatctaatgagg 536
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 327 atgtacgtctatatatacagtctgtggagaattctctggaactccagctatctaatgagg 268
Query: 537 aactgagagtatggggaaacactatggagagaatctatactgttgtgttcctccctctac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aactgagagtatggggaaacactatggagagaatctatactgttgtgttcctccctctac 208
Query: 597 cccctga 603
|||||||
Sbjct: 207 cccctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space: 589442
Effective search space used: 589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
