BAC Information

Click to search

BAC

Clone NameMSMg01-522O03
Chromosome12 (Build37)
Map Location 84,829,591 - 85,022,879
singlet/doubletdoublet
Overlap geneWdr21, Zfyve1, LOC626950, Rbm25
Upstream geneRgs6, Dpf3
Downstream genePsen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522O03.T7 (MSMg01no522_o03.b1)MSMg01-522O03.TJ (MSMg01no522_o03.g1)
ACCAG593335AG593336
length759763
length of high quality
(start - end)		598 (46 - 643)677 (78 - 754)
definitionCHROMAT_FILE: MSMg01no522_o03.b1 PHD_FILE: MSMg01no522_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:37 2005CHROMAT_FILE: MSMg01no522_o03.g1 PHD_FILE: MSMg01no522_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,022,288 - 85,022,879)(84,829,591 - 84,830,265)
sequence
GACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTGCAAAAGTATTGGGGAGCCATTTTAATATTTACAAGGAACAA
ATCAGCAGAACAAGATGCTATCAGATAGGCTGTGTACAGTAGCTGCAGCT
TATAAAACACACCAGTAGTCTGTGCCTGGTGAGCATAAAGAGGACCAAGG
ACACAGATGGCTTTACACCCGAGTGAGTACACAGAGCATCAACAAATTAG
AGGACAAAAGAATTCACATTTTCTACATTAAAAAATTACAGATCTCACAA
ATGTCTTTGAAGACACAGAAAATTCAAAGTCCTTTGAAGGGTGTGAAAGA
AGAAATCTGAAATGTAACTCTGAATGTAAAAAGTTTTACTTCACAAGGCC
AATTTTCTTGGCTTCTGTTTCATATATCAATAATCTCCACATTTTGACTA
TAAAAACTTCTGCTTCTTCATCTAGTACCTAGAAAATAAAAGACAGGAAC
ACATGTAAAGATACTTATTGGTATATTAAAACAACAGTAACATACCAAAA
CATCCACCAAATACAATCAACATAATGACTTANAAGAACAACTGTCCAGT
ATGAAAATATTTTAAACACAACATTTACGGTACAAAGAAAGATGATGATT
CAGCCAAACTCAATGACTTACTAAATACTAATAATTTCAATATACTTCTG
TTTTTTTACTGATGTGATTTTGAGACACACGGGCCCGGCATGACGTACAC
TTAAATGAG

CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCGTCACCTTTCTGGACTAAG
ATAGGAGGTGAAAAGAATTTGCAAGTGAATGTTCAGACGTGACTCCTGGC
TTCCCCAGTATGCGGCTGCTCAGAATCTGATAAACCCCAGAAGAAACTGA
GAGACTTCTGCGAACTCAGACTTCCACGGAGCACAGGGAGACTCGGAGTG
GGCGAAAACGCATGAAATCACTTAGAGGGCACAGGCATCGTTAGCTTATA
GAAGCCGGGCTACGGCCCCCTTGGCTGTTTAATCAGGTCAAATAGCTGGG
GGCTGGGAAGTGAAAAGGAAACCGAGAGATGCTGAATTGCAGTTCACAAT
TCCACCTGCTCTCGCCTTTTACGACTCTCGATGAATAAAGTAAAATACAA
TTACAAAGCAGTCCAGAACTTTCAGATTCCAGCTCCATTCACTATTAGAG
TTACAGATAAGCCCAGCAAAGCTGAGTGAGTCTGTGCGTGCAGACTGGAA
ATATTTAACTCTTTGTTTGCCTAGTAGGGTGATGTTCTCCCACCCTCTCT
TCTCGTTACAGAGTCTCTTGTTGAGAAAACTGGCATTGATGAATTCTAAA
CAGAACCAGGTACAATGGTGCTCCCTTAAAGTTCAAAACCAGCCTGGACT
ACATATGGATACCCACCCCCCAACATGGAAACCCAGTCTCATCTCCCTGT
CTTCCCACGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_o03.b1 MSMg01no522_o03.b1 CHROMAT_FILE:
MSMg01no522_o03.b1 PHD_FILE: MSMg01no522_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:37 2005
         (598 letters)



>mm_chr12_85022082_85023079
          Length = 998

 Score = 1123 bits (581), Expect = 0.0
 Identities = 589/592 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctgcaaaagtattggggagccattttaatatttacaaggaacaaatcagcagaac 66
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaattctgcaaaagaattggggagccattttaatatttacaaggaacaaatcagcagaac 739

                                                                       
Query: 67  aagatgctatcagataggctgtgtacagtagctgcagcttataaaacacaccagtagtct 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aagatgctatcagataggctgtgtacagtagctgcagcttataaaacacaccagtagtct 679

                                                                       
Query: 127 gtgcctggtgagcataaagaggaccaaggacacagatggctttacacccgagtgagtaca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtgcctggtgagcataaagaggaccaaggacacagatggctttacacccgagtgagtaca 619

                                                                       
Query: 187 cagagcatcaacaaattagaggacaaaagaattcacattttctacattaaaaaattacag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cagagcatcaacaaattagaggacaaaagaattcacattttctacattaaaaaattacag 559

                                                                       
Query: 247 atctcacaaatgtctttgaagacacagaaaattcaaagtcctttgaagggtgtgaaagaa 306
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 558 atctcacaaatgtctttgaagacaccgaaaattcaaagtcctttgaagggtgtgaaagaa 499

                                                                       
Query: 307 gaaatctgaaatgtaactctgaatgtaaaaagttttacttcacaaggccaattttcttgg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaaatctgaaatgtaactctgaatgtaaaaagttttacttcacaaggccaattttcttgg 439

                                                                       
Query: 367 cttctgtttcatatatcaataatctccacattttgactataaaaacttctgcttcttcat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cttctgtttcatatatcaataatctccacattttgactataaaaacttctgcttcttcat 379

                                                                       
Query: 427 ctagtacctagaaaataaaagacaggaacacatgtaaagatacttattggtatattaaaa 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctagtacctagaaaataaaagacaggaacacatgtaaagatacttattggtatattaaaa 319

                                                                       
Query: 487 caacagtaacataccaaaacatccaccaaatacaatcaacataatgacttanaagaacaa 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 318 caacagtaacataccaaaacatccaccaaatacaatcaacataatgacttaaaagaacaa 259

                                                               
Query: 547 ctgtccagtatgaaaatattttaaacacaacatttacggtacaaagaaagat 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctgtccagtatgaaaatattttaaacacaacatttacggtacaaagaaagat 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no522_o03.g1 MSMg01no522_o03.g1 CHROMAT_FILE:
MSMg01no522_o03.g1 PHD_FILE: MSMg01no522_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:37 2005
         (677 letters)



>mm_chr12_84829391_84830467
          Length = 1077

 Score = 1266 bits (655), Expect = 0.0
 Identities = 670/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcgtcacctttctggactaagataggaggtgaaaagaatttgcaagtgaatgttcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcgtcacctttctggactaagataggaggtgaaaagaatttgcaagtgaatgttcaga 260

                                                                       
Query: 61  cgtgactcctggcttccccagtatgcggctgctcagaatctgataaaccccagaagaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgactcctggcttccccagtatgcggctgctcagaatctgataaaccccagaagaaac 320

                                                                       
Query: 121 tgagagacttctgcgaactcagacttccacggagcacagggagactcggagtgggcgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagagacttctgcgaactcagacttccacggagcacagggagactcggagtgggcgaaa 380

                                                                       
Query: 181 acgcatgaaatcacttagagggcacaggcatcgttagcttatagaagccgggctacggcc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 actcatgaaatcacttagagggcacaggcatcgttagcttatagaagccgggctatggcc 440

                                                                       
Query: 241 cccttggctgtttaatcaggtcaaatagctgggggctgggaagtgaaaaggaaaccgaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccttggctgtttaatcaggtcaaatagctgggggctgggaagtgaaaaggaaaccgaga 500

                                                                       
Query: 301 gatgctgaattgcagttcacaattccacctgctctcgccttttacgactctcgatgaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgctgaattgcagttcacaattccacctgctctcgccttttacgactctcgatgaata 560

                                                                       
Query: 361 aagtaaaatacaattacaaagcagtccagaactttcagattccagctccattcactatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtaaaatacaattacaaagcagtccagaactttcagattccagctccattcactatta 620

                                                                       
Query: 421 gagttacagataagcccagcaaagctgagtgagtctgtgcgtgcagactggaaatattta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagttacagataagcccagcaaagctgagtgagtctgtgcgtgcagactggaaatattta 680

                                                                       
Query: 481 actctttgtttgcctagtagggtgatgttctcccaccctctcttctcgttacagagtctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actctttgtttgcctagtagggtgatgttctcccaccctctcttctcgttacagagtctc 740

                                                                       
Query: 541 ttgttgagaaaactggcattgatgaattctaaacagaaccaggtacaatggtgctccctt 600
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgttgagaaaactggcattaatgaattctaaacagaaccaggtacaatggtgctccctt 800

                                                                       
Query: 601 aaagttcaaaaccagcctggactacatatggatacccaccccccaacatggaaacccagt 660
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaagttcaaaaccagcctgaactacatatggatacccaccccccaacatggaaacccagt 860

                          
Query: 661 ctcatctccctgtct 675
           |||||||||||||||
Sbjct: 861 ctcatctccctgtct 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |