BAC Information

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BAC

Clone NameMSMg01-524E08
Chromosome12 (Build37)
Map Location 85,942,357 - 86,087,623
singlet/doubletdoublet
Overlap geneAbcd4, 7420416P09Rik, Tmem90a
Upstream geneLOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10
Downstream geneNpc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524E08.T7 (MSMg01no524_e08.b1)MSMg01-524E08.TJ (MSMg01no524_e08.g1)
ACCAG594388AG594389
length774773
length of high quality
(start - end)		624 (32 - 655)609 (63 - 671)
definitionCHROMAT_FILE: MSMg01no524_e08.b1 PHD_FILE: MSMg01no524_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:29 2005CHROMAT_FILE: MSMg01no524_e08.g1 PHD_FILE: MSMg01no524_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,942,357 - 85,942,981)(86,087,003 - 86,087,623)
sequence
CGGCCGCTATACGACTCCTATAGTCAGAGGATCCGCGGAATTCCAGACTA
GCCAAGGGTACACAGTGAGACTGTCTTCTTTTTTTTTTTTAAAGTGGCTA
GGTGGTGGTGGTGGTGGCACACGCCTTTAATTTCAGCTTGGGAGACAGAG
GCAGGCAGATCTCTGAGTTCAGGGCTAGCCAGGTCTACAGATCAAGTTCC
AGGATAACCAGGGCTAAACAGAAAAACCCTGTCTTGAAAAACAAAACAAA
AAAATAAAAATAAGATAAATAAATAAAAACAAAAACGTCCCACCCCGCAG
CAGTGTGACAACACACACACTATAGAAATATCACAAAAGAAAACATCTTT
GGCATTAGTAACTTTATCTTATGCTTTTGGGAATCTGCTACTTAATTTAT
AGGGGTCTTACCATGCAACCCAGAAGAGTGTCTCACTCATGATTCATCTG
TCTTTGCCACCATTCCTTTGGGGCAACAGGTATGTACTTGGCTTAGTTTT
TTTTTTCTTGTTCCTAATACAGATTTTGGGGTGGGGGTGGGGAAAACAAA
AGAAGACATCTACCAACCTTATTTTAGCTAGTAAGGGGGGAAGGGATAAT
TTTCTTGAATTAGATAATAAAGATGTGTATCAGTGGTATCACAGCCGCGT
AGGGTTCATAAGGCCCTAGGTTCAATCCGCAGTAATGAAACAGACGAACA
AAAGATAAAGACCGAGGATCCCCAGAGACGGTGGTCTTGGCACTGGCCAC
ACCCGCTGTCTTCTAGGCATTGGG

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTGGGATCTAAGTAGATAACATACCTGCAGATAAAATC
TGTGGGAGATACCCAAGCAGCAAAGCCACGGGGACCAGGAAGAGAAAGCA
GGAGGAGCAGGAGGTGTATGGGGAGGCCTGCGGGAGGGGCCTTCTTTTCC
TCTCCTAATCCCCAAGTCAACAAAGGATCTAACCTGAGAGGCTCCTGGAG
ATAGGAGAGTGGTCACTGAGCCTGGCTCTCTGCAGGGGACAGGAGGAAGA
AGCCCTGTTAACTCTGTTAACTCCCCCAACATCCTTTCTCAGGGTCCCTG
GCTGCTGTCACTCCCTCCCCCCAAGCTCCCCACTTTGTGTGCTACCTGAG
CACAACCTCGACAACTTTCAGCAGCTCTGTATTACAGATCCACAGCCACC
GTGCCTCCTGTTCCTCCCGGGAGGAAGGAGAGAAAGCAAACCTCTATTCA
GTTACCAGAGAACAAGACCCGTAAGCAACATGTAGGGAGCTAAGAAATCG
GGATAGCAAAAGCCCGCAAAAAAACAAAAAACAAAAAACAAAAAACAAAA
CAAACAAACAAAAAAAACCCCGCCAATAGGCAAAATAAACAAATGAAAAG
AAACTAAGAAGAAAGATCTGGTGGTGGTGAGATATGTCTGCAATGCCAGT
AGGGTCAGGAATTCAAAGTTATCCTTGGCTACGCAACAAGCTCAAGCTCA
AAAAGAAAAAGGTGGAGAGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_e08.b1 MSMg01no524_e08.b1 CHROMAT_FILE:
MSMg01no524_e08.b1 PHD_FILE: MSMg01no524_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:29 2005
         (624 letters)



>mm_chr12_85942154_85943181
          Length = 1028

 Score = 1158 bits (599), Expect = 0.0
 Identities = 616/625 (98%), Gaps = 7/625 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccagactagccaagggtacacagtgagactgtcttc---ttttttttttttaaag 63
           ||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||
Sbjct: 204 gaattccagactagccaagggtatacagtgagactgtcttctttttttttttttttaaag 263

                                                                       
Query: 64  tggctaggtggtggtggtggtggcacacgcctttaatttcagcttgggagacagaggcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggctaggtggtggtggtggtggcacacgcctttaatttcagcttgggagacagaggcag 323

                                                                       
Query: 124 gcagatctctgagttcagggctagccaggtctacagatcaagttccaggataaccagggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcagatctctgagttcagggctagccaggtctacagatcaagttccaggataaccagggc 383

                                                                       
Query: 184 taaacagaaaaaccctgtcttgaaaaacaaaacaaaaaaataaaaataagataaataaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaacagaaaaaccctgtcttgaaaaacaaaacaaaaaaataaaaataagataaataaat 443

                                                                       
Query: 244 aaaaacaaaaacgtcccaccccgcagcagtgtgacaacacacacactatagaaatatcac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaaacaaaaacgtcccaccccgcagcagtgtgacaacacacacactatagaaatatcac 503

                                                                       
Query: 304 aaaagaaaacatctttggcattagtaactttatcttatgcttttgggaatctgctactta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaagaaaacatctttggcattagtaactttatcttatgcttttgggaatctgctactta 563

                                                                       
Query: 364 atttataggggtcttaccatgcaacccagaagagtgtctcactcatgattcatctgtctt 423
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 564 atttataggggtcttaccatgcaacccagaagagtgtcacactcatgattcatctgtctt 623

                                                                       
Query: 424 tgccaccattcctttggggcaacaggtatgtacttggcttagtttttttttt----cttg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 624 tgccaccattcctttggggcaacaggtatgtacttggcttagttttttttttttttcttg 683

                                                                       
Query: 480 ttcctaatacagattttggggtgggggtggggaaaacaaaagaagacatctaccaacctt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttcctaatacagattttggggtgggggtggggaaaacaaaagaagacatctaccaacctt 743

                                                                       
Query: 540 attttagctagtaaggggggaagggataattttcttgaattagataataaagatgtgtat 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attttagctagtaaggggggaagggataattttcttgaattagataataaagatgtgtat 803

                                    
Query: 600 cagtggtatcacagccgcgtagggt 624
           |||||||||||||||||||||||||
Sbjct: 804 cagtggtatcacagccgcgtagggt 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1028
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1018
Effective search space:   625052
Effective search space used:   625052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_e08.g1 MSMg01no524_e08.g1 CHROMAT_FILE:
MSMg01no524_e08.g1 PHD_FILE: MSMg01no524_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:29 2005
         (609 letters)



>mm_chr12_86086911_86087920
          Length = 1010

 Score = 1116 bits (577), Expect = 0.0
 Identities = 606/623 (97%), Gaps = 16/623 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggatctaagtagataacatacctgcagataaaatctgtgggagatacccaagcagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ctgggatctaagtagataacatacctgcagataaaatctgtgggagatacccaagcagca 654

                                                                       
Query: 61  aagccacggggaccaggaagagaaagcaggaggagcaggaggtgtatggggaggcctgcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aagccacggggaccaggaagagaaagcaggaggagcaggaggtgtatggggaggcctgcg 594

                                                                       
Query: 121 ggaggggccttcttttcctctcctaatccccaagtcaacaaaggatctaacctgagaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ggaggggccttcttttcctctcctaatccccaagtcaacaaaggatctaacctgagaggc 534

                                                                       
Query: 181 tcctggagataggagagtggtcactgagcctggctctctgcaggggacaggaggaagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tcctggagataggagagtggtcactgagcctggctctctgcaggggacaggaggaagaag 474

                                                                       
Query: 241 ccctgttaactctgttaactcccccaacatcctttctcagggtccctggctgctgtcact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ccctgttaactctgttaactcccccaacatcctttctcagggtccctggctgctgtcact 414

                                                                       
Query: 301 ccctccccccaagctccccactttgtgtgctacctgagcacaacctcgacaactttcagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ccctccccccaagctccccactttgtgtgctacctgagcacaacctcgacaactttcagc 354

                                                                       
Query: 361 agctctgtattacagatccacagccaccgtgcctcctgttcctcccgggaggaaggagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agctctgtattacagatccacagccaccgtgcctcctgttcctcccgggaggaaggagag 294

                                                                       
Query: 421 aaagcaaacctctattcagttaccagagaacaagacccgtaagcaacatgtagggagcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aaagcaaacctctattcagttaccagagaacaagacccgtaagcaacatgtagggagcta 234

                                                                       
Query: 481 agaaatcgggatagcaaaagcccgc-aaaaaaacaaaaaacaaaaaa--caaaaaacaaa 537
           ||||||||||||||||||||||||| ||||||| |||||||||||||  |||||||||||
Sbjct: 233 agaaatcgggatagcaaaagcccgccaaaaaaaaaaaaaacaaaaaaaacaaaaaacaaa 174

                                                                       
Query: 538 acaaa-caaa----------caaaaaaaaccccgccaataggcaaaataaacaaatgaaa 586
           ||||| ||||          |||||||||||  |||||||||||||||||||||||||||
Sbjct: 173 acaaaacaaaaaaacaaaaacaaaaaaaacc--gccaataggcaaaataaacaaatgaaa 116

                                  
Query: 587 agaaactaagaagaaagatctgg 609
           |||||||||||||||||||||||
Sbjct: 115 agaaactaagaagaaagatctgg 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space:   599000
Effective search space used:   599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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