BAC Information

Click to search

BAC

Clone NameMSMg01-525J03
Chromosome12 (Build37)
Map Location 81,117,894 - 81,286,178
singlet/doubletdoublet
Overlap geneZfp36l1, Actn1
Upstream genePlekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754
Downstream geneWdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525J03.T7 (MSMg01no525_j03.b1)MSMg01-525J03.TJ (MSMg01no525_j03.g1)
ACCAG595374AG595375
length743741
length of high quality
(start - end)		517 (65 - 581)517 (69 - 585)
definitionCHROMAT_FILE: MSMg01no525_j03.b1 PHD_FILE: MSMg01no525_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:14 2005CHROMAT_FILE: MSMg01no525_j03.g1 PHD_FILE: MSMg01no525_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,117,894 - 81,118,410)(81,285,662 - 81,286,178)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTGGCTTCTAATACAGGCACTGTGCCTTTCTCCATGGAAAGCTAGGGTA
GTCTTTTCTGCTCCTCCCACATTCCTTTTCCTCATTTGAGTTTTCTGATA
GCAGCTCCTTGAATGTGTGAGCCAAGGACGGGACAGGGGTACTCATGTAC
CAAACTATCAATACAGCAAAACAAAACAAAACAAACAGAAGACCCAAAAC
CCTGTGCTATAGTAGTATTTCCAAAATGTTATAGTTAGAAGATCCTCCCT
TAGCAGCCTGATCGAGATGAAAATCCCACCAGGGCATCTGGAATTTCCTC
TGTCAGACATTCCAGATGATCAGGAAAGAAAATGATCCAAGACAATCTTT
TATTATATAGACTCTGTTCATGCTGACACCTGTCACCTACTTCATGCCAA
ATCCCAGTCATGAGACAAACCCATGGACAACTCTTCATCTTAGCTTTCAG
TGCCTTCAGTACCCAAGGGCTGTTATCTTCCCTCGGCTCAGTTCTTCCCA
ACTTGCATAGAACCCTCGAGGGGGGAAACCAACACTTTGACAAGCATCCA
AAGGTACCAGGGCTGGCTCTCAACACCACCGATTGGGGTAAGGAGGTCAC
CAGGACCCACTGTGATTAGTGGGACACCCTAAGCCAGGAGGTATTGAGCC
ACCAGTCAGGTCAGTCCTCTTTCCACTCTTTCCCTAGGTCCTG

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGCTGGGCATGAGTTTCTTCGTTTTTCCCC
CTGGCCTGAGATTTTGGATGCCTCAGTTACTTGATTCATTTCTTCCCAGC
ATGCATGATGAAAATCAACCCTTGTCCAGGGCTGGCAAAGAGGTGCTGAT
GCAGAAGCCAGTGGAGGGAGGGGGGATGTGACTCGGAGCCTCAGGGGCTT
CTTTACAACCGCATAGGATAGCAGGGTGGAAGGGGTTGTTGGCACAGGTG
TGTCTAGGTACCCCTGCTGCTGGGGCAGGCTGGTCATGACTTTCTCTATC
TCGTTTCCAGGCAGAAACAGCAGCCAATCGCATCTGCAAAGTGTTGGCGG
TCAATCAAGAGAACGAGCAGCTTATGGAAGACTATGAGAAGCTGGCCAGT
GATGTGGGTACCCCTCTGTTCTACCTTGGCCCCAGCTAGGCCATGTATGA
CACCCTGAGAGAGTGAAGCTCCCAGGATCTGTACCTATATTGTCATTCTG
TGGGCACAGTCCCAGGCTGGTGTAGTGCATGATCCAATCACAGTTAACAC
AGGGCAGCTTGGTTCTGGGCCTCTGGGAGAGCAGAAGTGAAAACAGGAGA
GATGGTCTCTGGGCTACAGTGGGCCTGGGTAATGCCCTCTCCTCTTTGGC
TCTTGCTTTTACTTTTTCTTTCCCGAATGGGAGTTGAAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_j03.b1 MSMg01no525_j03.b1 CHROMAT_FILE:
MSMg01no525_j03.b1 PHD_FILE: MSMg01no525_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:14 2005
         (517 letters)



>mm_chr12_81117694_81118610
          Length = 917

 Score =  961 bits (497), Expect = 0.0
 Identities = 512/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcactgtgcctttctccatggaaagctagggtagtcttttctgctcctcccacattc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 caggcactgtgcctttctccatggaaagctagggtagccttttctgctcctcccacattc 260

                                                                       
Query: 61  cttttcctcatttgagttttctgatagcagctccttgaatgtgtgagccaaggacgggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttcctcatttgagttttctgatagcagctccttgaatgtgtgagccaaggacgggac 320

                                                                       
Query: 121 aggggtactcatgtaccaaactatcaatacagcaaaacaaaacaaaacaaacagaagacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggggtactcatgtaccaaactatcaatacagcaaaacaaaacaaaacaaacagaagacc 380

                                                                       
Query: 181 caaaaccctgtgctatagtagtatttccaaaatgttatagttagaagatcctcccttagc 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 caaaaccctgtgctatagtagtatttccaaaatgctatagttagaagatcctcccttagc 440

                                                                       
Query: 241 agcctgatcgagatgaaaatcccaccagggcatctggaatttcctctgtcagacattcca 300
           ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcctaatcgagatgaaaatcgcaccagggcatctggaatttcctctgtcagacattcca 500

                                                                       
Query: 301 gatgatcaggaaagaaaatgatccaagacaatcttttattatatagactctgttcatgct 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 gatgatcaggaaagaaaatgatccaagacaatcttttattatacagactctgttcatgct 560

                                                                       
Query: 361 gacacctgtcacctacttcatgccaaatcccagtcatgagacaaacccatggacaactct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacacctgtcacctacttcatgccaaatcccagtcatgagacaaacccatggacaactct 620

                                                                       
Query: 421 tcatcttagctttcagtgccttcagtacccaagggctgttatcttccctcggctcagttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatcttagctttcagtgccttcagtacccaagggctgttatcttccctcggctcagttc 680

                                                
Query: 481 ttcccaacttgcatagaaccctcgaggggggaaacca 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcccaacttgcatagaaccctcgaggggggaaacca 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no525_j03.g1 MSMg01no525_j03.g1 CHROMAT_FILE:
MSMg01no525_j03.g1 PHD_FILE: MSMg01no525_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:14 2005
         (517 letters)



>mm_chr12_81285462_81286378
          Length = 917

 Score =  969 bits (501), Expect = 0.0
 Identities = 513/517 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggctgggcatgagtttcttcgtttttccccctggcctgagattttggatgcctcagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 caggctgggcatgagtttcttcgtttttccccctggcctgagattttggatgcctcagtt 658

                                                                       
Query: 61  acttgattcatttcttcccagcatgcatgatgaaaatcaacccttgtccagggctggcaa 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 657 acttgattcatttcttcccagcatgcgtgatgaaaatcaacccttgtccagggctggcaa 598

                                                                       
Query: 121 agaggtgctgatgcagaagccagtggagggaggggggatgtgactcggagcctcaggggc 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 597 agaggtgctgatgcagaagccagtggagggaggggggatgtgacttggagcctcaggggc 538

                                                                       
Query: 181 ttctttacaaccgcataggatagcagggtggaaggggttgttggcacaggtgtgtctagg 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttctttccaaccgcataggatagcagggtggaaggggttgttggcacaggtgtgtctagg 478

                                                                       
Query: 241 tacccctgctgctggggcaggctggtcatgactttctctatctcgtttccaggcagaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tacccctgctgctggggcaggctggtcatgactttctctatctcgtttccaggcagaaac 418

                                                                       
Query: 301 agcagccaatcgcatctgcaaagtgttggcggtcaatcaagagaacgagcagcttatgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agcagccaatcgcatctgcaaagtgttggcggtcaatcaagagaacgagcagcttatgga 358

                                                                       
Query: 361 agactatgagaagctggccagtgatgtgggtacccctctgttctaccttggccccagcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agactatgagaagctggccagtgatgtgggtacccctctgttctaccttggccccagcta 298

                                                                       
Query: 421 ggccatgtatgacaccctgagagagtgaagctcccaggatctgtacctatattgtcattc 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 297 ggccatgtatgacaccctgagagagtgaagctcccaggatctgtacctgtattgtcattc 238

                                                
Query: 481 tgtgggcacagtcccaggctggtgtagtgcatgatcc 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgtgggcacagtcccaggctggtgtagtgcatgatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |