BAC Information

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BAC

Clone NameMSMg01-526B24
Chromosome12 (Build37)
Map Location 12,506,081 - 12,506,537
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217390, LOC628327, LOC627110, LOC100043209, D12Ertd553e
Downstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526B24.T7 (MSMg01no526_b24.b1)MSMg01-526B24.TJ (MSMg01no526_b24.g1)
ACCAG595795AG595796
length740739
length of high quality
(start - end)		505 (40 - 544)354 (69 - 422)
definitionCHROMAT_FILE: MSMg01no526_b24.b1 PHD_FILE: MSMg01no526_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:57 2005CHROMAT_FILE: MSMg01no526_b24.g1 PHD_FILE: MSMg01no526_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AACCTCAGCTACCTCAAAAGACTCTTTCCTTCTAAATCTGCATCACAGCC
ACTTGTGGCCAGACCAGATCTACCCATCAGTCTGGGTTTCTGTATCCCTG
AATTTTTACATTTTTGAATAGTTATGAACAAGAATATTAGCAAAAATATA
TTACAAGGCTAAATACCTCCCATGAAAACTAAAACACTTTTCTCTTTTGT
TGTACACTGAAATTTATTTTACAAAACTCTGTTGTAGTCTTTCAGGATAA
TAAATAAAATAAATAAATCATCTCTATTGATTGCCAAGTTCTGTTTACCA
CAGGTCTTAGTGAGACATTGTGATAATTTGAGTTACTTTTAAATTTTGTT
TTAAATTGTATATTCATGGTACTTACTAGTCCAGTTGTTCTGCCAGCTTT
AGCCCTTACCAGGTTTTATTTATCAGAAGCTGATGGCCACTGCCCTTAAA
ATATAAAGAATGTTACATGATACAGCAGTTTCAATTTTCCCTCTCTAAGA
GTACCGTCTGAGAGACTTCCAGAAATTCCTCTCAGACTTTCTGCCCCAGT
TTGGACTATCTCCAGGACAGTTGTTACCAGATACTCCGTTGGATCACATT
TCTAGGAACATTTTCCTTTTTCCCTTTCCTTTTCCCTTTTCCCATTTCTC
AGAGAAATCCTATACTTTCTGAAAAATTCCAAGAATGAAG

TGTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTATGGACAAGAAAAATAGGTTGTAAGCCTA
AGGACCTGCGTTTGAAACCCAGAACCAACCGACGTGGAAACTCTGGGTGT
GGTGGCGCAAGCTTGCATTCCAAGGGAGGCAGAGACAGGAAGGGGCTCAG
GGCTCAGCGGCCCGTTGGTAGACTCGAATGGCACCCCGGGAGATGACACC
TAATGGTGTCCTGGAGCCTACATTCACACACACACACGTAATTGTACATA
CATGAACACATACATACATACACGTGCAAGATGATTTTTAAAACCTACTT
TTCGGAGGAATTAGAGAGAGCCAGAAAGGAGGTGTGCATCCTACCAGCTT
TCAGGTAATGGTGGCTAGGAAGAGAGATGTGGCCCTTGCTGCTCACAGGA
AACAGCAAGGTGCCCCATGCATGACAGACCCTCACCCCCAGATGATGGAG
AAGCTACACGGTAGAGAAGACCCACTTATGAGAACCCNATTCCCCCTGNT
GTATGATGACAGTGACTATTAGTCCCCACCTTACCAGACAAAAACTGAAA
TCTTGGGTGTTGAGGGACCCTTCCTCAAGGAAAGCTTGCCTAAGGGAAAT
TCTTAAAACCAACTCCAGTTTTTCCCCTATTTAAACCGGAAGTCTCCATC
TGCCTCCGGAAAAGAAAAAAAAACCCCCGGTTGAAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_b24.b1 MSMg01no526_b24.b1 CHROMAT_FILE:
MSMg01no526_b24.b1 PHD_FILE: MSMg01no526_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:57 2005
         (505 letters)



>mm_chr12_12506081_12506985
          Length = 905

 Score =  884 bits (457), Expect = 0.0
 Identities = 457/457 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaacctcagctacctcaaaagactctttccttctaaatctgcatcacagccact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaattccaacctcagctacctcaaaagactctttccttctaaatctgcatcacagccact 398

                                                                       
Query: 65  tgtggccagaccagatctacccatcagtctgggtttctgtatccctgaatttttacattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgtggccagaccagatctacccatcagtctgggtttctgtatccctgaatttttacattt 338

                                                                       
Query: 125 ttgaatagttatgaacaagaatattagcaaaaatatattacaaggctaaatacctcccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttgaatagttatgaacaagaatattagcaaaaatatattacaaggctaaatacctcccat 278

                                                                       
Query: 185 gaaaactaaaacacttttctcttttgttgtacactgaaatttattttacaaaactctgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gaaaactaaaacacttttctcttttgttgtacactgaaatttattttacaaaactctgtt 218

                                                                       
Query: 245 gtagtctttcaggataataaataaaataaataaatcatctctattgattgccaagttctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gtagtctttcaggataataaataaaataaataaatcatctctattgattgccaagttctg 158

                                                                       
Query: 305 tttaccacaggtcttagtgagacattgtgataatttgagttacttttaaattttgtttta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tttaccacaggtcttagtgagacattgtgataatttgagttacttttaaattttgtttta 98

                                                                       
Query: 365 aattgtatattcatggtacttactagtccagttgttctgccagctttagcccttaccagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  aattgtatattcatggtacttactagtccagttgttctgccagctttagcccttaccagg 38

                                                
Query: 425 ttttatttatcagaagctgatggccactgcccttaaa 461
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  ttttatttatcagaagctgatggccactgcccttaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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