BAC Information

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BAC

Clone NameMSMg01-527I23
Chromosome12 (Build37)
Map Location 114,970,305 - 114,970,522
singlet/doubletsinglet
Overlap geneIgh
Upstream geneAW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6
Downstream geneIghv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527I23.T7 (MSMg01no527_i23.b1)MSMg01-527I23.TJ (MSMg01no527_i23.g1)
ACCAG596884AG596885
length1,173785
length of high quality
(start - end)
---554 (77 - 630)
definitionCHROMAT_FILE: MSMg01no527_i23.b1 PHD_FILE: MSMg01no527_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:50 2005CHROMAT_FILE: MSMg01no527_i23.g1 PHD_FILE: MSMg01no527_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGTATACCTTCTCCGTAGTCCATATCAACAACGAGAATATGTACATCCA
TCTAGATCGACAGATATATACATTACACAAACACCCCGCTAGACCATGAC
GACAGTATGGAGGAACTACACGTAATAACCACACGAGAACCCTGTCACTA
TGTAATGAACTACGAATACGCAGAACGCGCGANCAAACGGTAGTGAGAGC
GTGCTGTGGACGAGAGGCGACAACGAGAGCAGGACGCGCTAGAGAAGCGG
CGAAGCGTGAGAGACAACGAGCGGAGTGCGGATANCCGAGAGTATAAGTG
GTGCAGCGCGCCGCGCTTACAGTATATATACATATTTCTGTCGGGCGTCA
GTCGCTGAGAGTGATACGCGTCTGGGCTTAGTAAAGCGAGGGATGATTAG
CGTATGATGAAGTATCGTAGGACAGACGTGAGTGGGATGTGAGTGTGGAC
GCAGCGGAACAGACACCCGCAGAGTGAGAGAAGGTAGATATTGCGGCTGA
GCACAAGAGAGAGTGGATGGGTGTGTGGTGGACGACGAAGGGGATGAAAG
ATCGCACAACCGATTGAGAGAAGATGTGTGTGACCATACGGGCACCGCAC
GCGACGAAGAGCCCGCGAGGAGCGGGAGGGCCGCGCAGACGCAGCGTGAA
GGAGGCGGGATATGGAGGTAGAGAAGACCAGGCGCGCATAATATAAAAAA
AAGTAAGCGCATCATATCAAAACACGACGCTGGTATAGACTACGCTCCGG
CGAGGATATAATCGTCACCCGCGGGTTATGTGAGAACGTGATAACACTAC
ATAATTAGTTTCGCCGCAGGGCGTTCATGTGGGAGCAGCCCGTCCACCTG
CTCATTGCCGCAAACACAGCTCGAGCTATCGTGGTTTGTGTAAGGTGTGA
ACTACAAGTGGGTCGCTAGAATAGACGCTCCGACGCNCACAGCGGTTGAA
GTGCACGTGAGACGGTCGCCGGATGTTAGTATATACGAACACCTAAGCAG
CGCGCGCGGAGCGTGATACGGCGCGGGCGGACGAGGCCGACGGAAGCGGT
GTGATGTATATTGAGAGACGGCAGATAGACGGAGCTATTCTGAGTGCATT
TCTAGTTATTAGACGCGTGAAACACGACCCCGTCTTAATACATCCAGATA
TCAACATGTGCCGACTATAATAG
NNACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTAT
ATATGTTGGATATTAGCCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTT
GCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTA
CAGCACAAGCTATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATA
TCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGG
TTTTATGTGAAGTTCATTTCTTTTTCTAATGAACAGCAATACAGAAGTGT
TGGCCAAATCAACACATTTACCCCAAGTTGCTTTGCCATAGTGCTTCATC
ACAGCAGCAGTAACCCCCAGTAAGGACACTGGTTCCCCTGAAACTCTTCT
ATGTAGACCTTCTGATGAAGTTCCAGGATTGGGGTCTTTATCTGACTGTT
GTCCTGGTTACTTCATGCCCAACAATAGAATATTGTTCTCATTTTCAATA
ATATATGAAGTTATCTGTTTATAGGATCTTCCTAAAGCAGAAAACTATAT
AAAATGTCTGCTTCCTTTAAGAAAAATATGGTGCTTATAGGTAAATGGAA
GAAAGGGTGGNAGATATTGAGTTATTGTAGACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_i23.g1 MSMg01no527_i23.g1 CHROMAT_FILE:
MSMg01no527_i23.g1 PHD_FILE: MSMg01no527_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:50 2005
         (554 letters)



>mm_chr12_114969655_114970608
          Length = 954

 Score =  369 bits (191), Expect = e-106
 Identities = 212/219 (96%), Gaps = 2/219 (0%)
 Strand = Plus / Minus

                                                                       
Query: 337 ttcatttctttttctaatgaacagcaatacagaagtgttggccaaatcaacacatttacc 396
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 868 ttcatttctttttctaatgaacagcaatacagaagtgttggccaaataaacacatttacc 809

                                                                       
Query: 397 ccaagttgctttgccatagtgcttcatcacagcagcagtaacccccagtaaggacactgg 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 808 ccaagttgctttgccatagtgcttcatcacagcagcagtaacccccagtaaggccactgg 749

                                                                       
Query: 457 ttcccctgaaactcttctatgtagaccttctgatgaagttccaggattggggtctttatc 516
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttcccttgcaactcttctatgtagaccttctgatgaagttccaggattggggtctttatc 689

                                                  
Query: 517 tgactgttgtcctggtta-cttcatgcccaacaatagaa 554
           |||||||||||||||||| || |||| ||||||||||||
Sbjct: 688 tgactgttgtcctggttaact-catgtccaacaatagaa 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)