BAC Information

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BAC

Clone NameMSMg01-531A22
Chromosome12 (Build37)
Map Location 26,528,250 - 26,668,086
singlet/doubletdoublet
Overlap geneLOC668726
Upstream geneMboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531A22.T7 (MSMg01no531_a22.b1)MSMg01-531A22.TJ (MSMg01no531_a22.g1)
ACCAG599550AG599551
length775778
length of high quality
(start - end)		622 (48 - 669)521 (80 - 600)
definitionCHROMAT_FILE: MSMg01no531_a22.b1 PHD_FILE: MSMg01no531_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:34 2005CHROMAT_FILE: MSMg01no531_a22.g1 PHD_FILE: MSMg01no531_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,528,250 - 26,528,868)(26,667,566 - 26,668,086)
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATAGTTGAGAAGTATGGTGTATAAGAGTTGAACTATTTAGTG
CACAACTCTCAAATCTCCTGATCTGGGCAAGGAGGCTTAGCACCGAGTTA
CTTTCCAAAATGCTAACGATTCATGCACTGTAGGATTTGCAATAAAACAT
TGTCAATGATAAGATCTAATAGGATCTCCCTAACTAAGCAGAATTTGTGT
AAATGAGGCCAGAATGCTGTTGACTGTGCCATCCTCCCATCTCAGCCTCC
AGTTGCAGGAATTCCCACTGTGTACCACCCTTCCAAGGTGGGTCTCTATT
TAAAATCACAGAGAGGGGCTGTGGGTATGGCTTAGTTCATGGAGAGTTTG
TCTAGCATGCACAAAACCCTGAATTCAATCTTAACCCCATGTAAGCATGA
TGAAATGGTCCAGATGTGTAATCTCAGCAGTTAGGAGGTCAGGGCCAAGA
GGATCAGGAGTTCAAAGTTATCCTTGACTACATAGTGAATTAGAGACTGG
TTTATGGGAGACTCTGTATCAAATAGTCAGACAAATATATAAAAAAAAAT
AGATGGAAGTAAAAACACTATAAACCTCTTCCACTTTTCAAGGTGTTTGT
AAATAGGTATTTGAGATCTGAAGATGATTGTTAGCACCATTTGATCTTTA
GCCAATTTGCCTTTACAGCTGAACCAAAGTTCAGGGAACCTAAGACTTCC
CTCCTGAAATCTGGGTATTGCCCCC

CCCTTCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTGGCCTCTAGCTCTCTCC
TTTTCAGTCAGTGTGAAGCCATCATCTTTGCAGACAAACTTTTTTTTAAA
AACAAGTTTAAAAATGTACTTTGTAAAACTAGAACACAGAATCTTTTAAA
AAGATTGTTATTTTCCCCCTTAAGCATCTTCCAGAAACAGCCAGCAAGGA
GAGACACATCCCCCACACAACCCACACAAGAATATCAAAATCTGTTTGAT
AATGAATTTGAATTTTTTCAAAAAAATCCATACGCTAAAATCGTTCTTAT
TTTTAATTTTTCCCTCTTTTTTCAAATTCATGGACATAATGTTTCTTATT
GCAACTCAGAAACATCTCAAAATAGCTGCCAGAATTTTACAAATAAACAT
AAAACCAAGACTTTTGCAGTATAAAAATAGTTCTCACTTCTGCTCTAAAG
GTTGGTTGCCCTTCTGAATCTTCGGCAGGGCTGGGACTGCACAGGCCTCA
CAGGCACACTGCCACAGGGAGATGAGACCAGTTTTCCTCTCTGGAAACAC
TCAGACAACATTCTGTGCCTTGCATCTCATATATGGAAGTGCAGTCCTTA
TTTTAAGTAAAGATGGGAATGCGGGTATAAAGCTGAACTCCACAGAAACG
ATCGGTTCAGTCACACTGTAATTCANGCAGGTTTATAAGCATCAGAATTC
TTCCCCTCCAAGTTTCCTGTGACAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_a22.b1 MSMg01no531_a22.b1 CHROMAT_FILE:
MSMg01no531_a22.b1 PHD_FILE: MSMg01no531_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:34 2005
         (622 letters)



>mm_chr12_26528047_26529068
          Length = 1022

 Score = 1197 bits (619), Expect = 0.0
 Identities = 619/619 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatagttgagaagtatggtgtataagagttgaactatttagtgcacaactctc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatagttgagaagtatggtgtataagagttgaactatttagtgcacaactctc 263

                                                                       
Query: 64  aaatctcctgatctgggcaaggaggcttagcaccgagttactttccaaaatgctaacgat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaatctcctgatctgggcaaggaggcttagcaccgagttactttccaaaatgctaacgat 323

                                                                       
Query: 124 tcatgcactgtaggatttgcaataaaacattgtcaatgataagatctaataggatctccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcatgcactgtaggatttgcaataaaacattgtcaatgataagatctaataggatctccc 383

                                                                       
Query: 184 taactaagcagaatttgtgtaaatgaggccagaatgctgttgactgtgccatcctcccat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taactaagcagaatttgtgtaaatgaggccagaatgctgttgactgtgccatcctcccat 443

                                                                       
Query: 244 ctcagcctccagttgcaggaattcccactgtgtaccacccttccaaggtgggtctctatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcagcctccagttgcaggaattcccactgtgtaccacccttccaaggtgggtctctatt 503

                                                                       
Query: 304 taaaatcacagagaggggctgtgggtatggcttagttcatggagagtttgtctagcatgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taaaatcacagagaggggctgtgggtatggcttagttcatggagagtttgtctagcatgc 563

                                                                       
Query: 364 acaaaaccctgaattcaatcttaaccccatgtaagcatgatgaaatggtccagatgtgta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acaaaaccctgaattcaatcttaaccccatgtaagcatgatgaaatggtccagatgtgta 623

                                                                       
Query: 424 atctcagcagttaggaggtcagggccaagaggatcaggagttcaaagttatccttgacta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atctcagcagttaggaggtcagggccaagaggatcaggagttcaaagttatccttgacta 683

                                                                       
Query: 484 catagtgaattagagactggtttatgggagactctgtatcaaatagtcagacaaatatat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catagtgaattagagactggtttatgggagactctgtatcaaatagtcagacaaatatat 743

                                                                       
Query: 544 aaaaaaaaatagatggaagtaaaaacactataaacctcttccacttttcaaggtgtttgt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaaaaaaaatagatggaagtaaaaacactataaacctcttccacttttcaaggtgtttgt 803

                              
Query: 604 aaataggtatttgagatct 622
           |||||||||||||||||||
Sbjct: 804 aaataggtatttgagatct 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no531_a22.g1 MSMg01no531_a22.g1 CHROMAT_FILE:
MSMg01no531_a22.g1 PHD_FILE: MSMg01no531_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:35 2005
         (521 letters)



>mm_chr12_26667366_26668286
          Length = 921

 Score = 1007 bits (521), Expect = 0.0
 Identities = 521/521 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactggcctctagctctctccttttcagtcagtgtgaagccatcatctttgcagacaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cactggcctctagctctctccttttcagtcagtgtgaagccatcatctttgcagacaaac 662

                                                                       
Query: 61  ttttttttaaaaacaagtttaaaaatgtactttgtaaaactagaacacagaatcttttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttttttttaaaaacaagtttaaaaatgtactttgtaaaactagaacacagaatcttttaa 602

                                                                       
Query: 121 aaagattgttattttcccccttaagcatcttccagaaacagccagcaaggagagacacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaagattgttattttcccccttaagcatcttccagaaacagccagcaaggagagacacat 542

                                                                       
Query: 181 cccccacacaacccacacaagaatatcaaaatctgtttgataatgaatttgaattttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cccccacacaacccacacaagaatatcaaaatctgtttgataatgaatttgaattttttc 482

                                                                       
Query: 241 aaaaaaatccatacgctaaaatcgttcttatttttaatttttccctcttttttcaaattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaaaaatccatacgctaaaatcgttcttatttttaatttttccctcttttttcaaattc 422

                                                                       
Query: 301 atggacataatgtttcttattgcaactcagaaacatctcaaaatagctgccagaatttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atggacataatgtttcttattgcaactcagaaacatctcaaaatagctgccagaatttta 362

                                                                       
Query: 361 caaataaacataaaaccaagacttttgcagtataaaaatagttctcacttctgctctaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaataaacataaaaccaagacttttgcagtataaaaatagttctcacttctgctctaaa 302

                                                                       
Query: 421 ggttggttgcccttctgaatcttcggcagggctgggactgcacaggcctcacaggcacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggttggttgcccttctgaatcttcggcagggctgggactgcacaggcctcacaggcacac 242

                                                    
Query: 481 tgccacagggagatgagaccagttttcctctctggaaacac 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgccacagggagatgagaccagttttcctctctggaaacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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