Query= MSMg01no532_g18.b1 MSMg01no532_g18.b1 CHROMAT_FILE:
MSMg01no532_g18.b1 PHD_FILE: MSMg01no532_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:20 2005
(587 letters)
>mm_chr12_32122439_32123426
Length = 988
Score = 1093 bits (565), Expect = 0.0
Identities = 582/591 (98%), Gaps = 7/591 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaaagagtgttcctctcgagggcatttatcgtaccaggagttagcttgcacaca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ggaattcaaagagtgttcctctcgagggcatttatcgtaccaggagttagcttgcacaca 257
Query: 64 cgtcttttgcagctactaagttctgcggagtcatccaggcaagcaacaacacctctgaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cgtcttttgcagctactaagttctgcggagtcatccaggcaagcaacaacacctctgaac 317
Query: 124 ccccatctaagccgctaggtgaaatgtcagggagataacactggcattttttttt----- 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ccccatctaagccgctaggtgaaatgtcagggagataacactggcatttttttttttttt 377
Query: 179 -aaaccatggctgtgcaaatctctgcaaaccaatgaaatctctctgccacacacacaggt 237
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 378 taaaccatggctgtgcaaatctctgcaaaccaatgaaatctctctgtcacacacacaggt 437
Query: 238 gcagtgggtggttcaatctcagcaggaagttgaggaagctgtagtcatcatcacttctgc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcagtgggtggttcaatctcagcaggaagttgaggaagctgtagtcatcatcacttctgc 497
Query: 298 tgatcagagactcaaaggtcaagactatattggagtctttccattgttgtaaaagttaat 357
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 498 tgatcagagactcaaaggtcaagaccatattggagtctttccattgttgtaaaagttaat 557
Query: 358 gaaagttaattattaaagttgacagaaaggtaatttgcccaccgctctacataacctata 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaaagttaattattaaagttgacagaaaggtaatttgcccaccgctctacataacctata 617
Query: 418 taaagacatctataatacatatggatgcatgcagaatctatagacccaagtagatgcata 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 taaagacatctataatacatatggatgcatgcagaatctatagacccaagtagatgcata 677
Query: 478 ctgtctcctagaacaggactgctttatctcaaaaaaaaaaaaaaaaaaa-ccttcccact 536
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 678 ctgtctcctagaacaggactgctttatctcaaaaaaaaaaaaaaaaaaaaccttcccact 737
Query: 537 gttgctgaagcgccacactgaatatattaaggtaggaactgaacttatcaa 587
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gttgctgaagcgccacactgaatatattaaggtaggaactgaacttatcaa 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space: 564306
Effective search space used: 564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_g18.g1 MSMg01no532_g18.g1 CHROMAT_FILE:
MSMg01no532_g18.g1 PHD_FILE: MSMg01no532_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:20 2005
(678 letters)
>mm_chr12_32252585_32253662
Length = 1078
Score = 1234 bits (638), Expect = 0.0
Identities = 668/678 (98%)
Strand = Plus / Minus
Query: 1 cttggagataatgctgaggttagccgatgctatgataccctgggtaatttcaagtagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cttggagataatgctgaggttagccgatgctatgataccctgggtaatttcaagtagtgg 636
Query: 61 agtgggctatggagcttcaagctccagctcagccacactatgagcaaattattacttagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 agtgggctatggagcttcaagctccagctcagccacactatgagcaaattattacttagc 576
Query: 121 atttctgcatgtttcctcaaatgtaaactgaggataacaatacctacctcgatgcaatat 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 atttctgcacgtttcctcaaatgtaaactgaggataacaatacctacctcgatgcaatat 516
Query: 181 ttatgcttgatagcatcttaacttccaagccaactttcaagtcaaactatacaggacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttatgcttgatagcatcttaacttccaagccaactttcaagtcaaactatacaggacaat 456
Query: 241 ggggcataagacttgcctgagttaacctgtggagacttaattggtataaggtgctactct 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 455 ggggcataagacttgcctgagttaacccgtggagacttaattggtataaggtgctactct 396
Query: 301 aaccccaaattaaatctgtaattatgttgtaggccgaccagcggctctcgaggaacggta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaccccaaattaaatctgtaattatgttgtaggccgaccagcggctctcgaggaacggta 336
Query: 361 cgactgagatggcagctcgagctgaaagaaaggaactagaaggacagaagaaagaacgga 420
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 335 cgactgagatggcagctcgaactgaaagaaaggaactagaaggacggaagaaagaacgga 276
Query: 421 gccaagtcaaacaggattctgatcaaagctcaatttttatattccgacactcagttatga 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 275 gccaagtcaaacaggattctgatcaaagctcaatttttatatttcgacactcagttatga 216
Query: 481 aggagggaaaggggcccgattcccgccaaataatcctggagtccagttgcagggtgacca 540
|||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct: 215 aggagggaaaggggccagattcccgccaaataatcctggggttcagttgcagggtgacca 156
Query: 541 cgtgtatggctccggaacagcaaagcagcaggctccagcagtgggcgtggcagaacgatt 600
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 catgtatggctccagaacagcaaagcagcaggctccagcagtgggcgtggcagaacgatt 96
Query: 601 gagcggcaagctccaccctgatgcaaacagtgaaacctgagcaaacaggtttcaggctgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 gagcggcaagctccaccctgatgcaaacagtgaaacctgagcaaacaggtttcaggctgg 36
Query: 661 ggaggggaggctacgtaa 678
||||||||||||||||||
Sbjct: 35 ggaggggaggctacgtaa 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
