CCTTACTTTTTTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTTTGTTGCCTTTGAATCATCATGCATGCTTTGTT
TCCTAACCCCGTGTCTCATGTTTTCATAATGTTGGGTTTTTAATCAATAT
ATATCAAATTCTATCTATTGTACATAAGCTTAATACAAAACTTATTATAT
GTCTATATTAATATAATAACATTAATAACATTATATTAACATGTTAATAA
TAATCTTTTATTTAAGGCAGTGATAAATGGCTTTGCCATGTAAGATGCAT
TCTTTCTGATTTCAAAATATTTTGAAGTTTGATATAATTATTATATGAAG
ATTTAACTTAAGCAGTATATAAATTTATAACTTCTTTTGTTTTCCTGCAT
CAGTAATAATTGTGTTAAAATAAGCTTTATATTCATTTTAACTCATATAG
TGTCTATATAAAAATGTTTAATCAATGGTAGTAATTGCTTTTTAGGATGT
ACTCAGAGCATAACAGGCACATCTTGAGTCTATATACAATATCTGTGATT
ATATGTCTAAATATCACATGTTTGTTCCCTAAGGAACTGAAACTCAAATT
TATATATTGGGTAGTAGAAACGTTTTCTAAAAAATGTCACTATGCTTTAG
ATTCCACTATTTGGGTGGACATCAGCAGTATGTGAAAAATTTATAAAAAA
AAATACTGCCTGGTAAAGCATATATGTTTGTCATT

NACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGATTGTGGGCCCTCTGTCCCA
CTTCTCTGGCTGTGAAATGAGTTCCTTGGTCAGAAGCAATACTGTGTGGA
ATACCATGAAGACAGGTAAGGCATTCTGTCAGTCCATGAATGGTGGTTTT
AGCAGAGGCATTATGTGCAGGAAAGGCAAATCCATAACCAGAATAAGTTT
CTACTCCAGTAAGTACAAAACGCTGTCCTTTCCACGGAGGAAGTGGTCCA
ATGTAGTCAACCTGCCACCAGGTTGCTGGCTGGTCACCTCGAGGAATGGT
GCCATATCTGGGGCTCAGGGTTGGTTTCTGCTGTTGGCAGATCTGGCATT
CACCAGTAGCTATAGCCAGGTCAGCCTTGGTGAGTGAATCTGAATTTATT
TGTATTTATATTTGTATTTTATTTTTTATAATTAAATTCTATTTTTATTA
GCTTCTCAGTGTTCAAATTCTTTTTTTAAAAAAGATTAATTTATTACTAT
ACATAAGTACACTGTGGCTATCTTCAGGGGCACAAGAAGAGTGTGTCAGA
TCTCATTATGAATGTTGTGAGCCACCATGTGGTTGCTGGCATTTGAACTC
AAGACTTTAGGAAGAGCAGTCAGTGTTCATACCTGCTGAGCCATCTTGAC
AACCCTTCAAATTCTTTTTTTTTATTAATTATTAATTTCTTTTTTAGACT
N

Query= MSMg01no533_b09.b1 MSMg01no533_b09.b1 CHROMAT_FILE:
MSMg01no533_b09.b1 PHD_FILE: MSMg01no533_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:12 2005
         (646 letters)



>mm_chr12_67034322_67035367
          Length = 1046

 Score = 1181 bits (611), Expect = 0.0
 Identities = 635/643 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctttgttgcctttgaatcatcatgcatgctttgtttcctaaccccgtgtctc 63
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctttgttgcctttgaatcattgtgcatgctttgtttcctaaccccgtgtctc 263

                                                                       
Query: 64  atgttttcataatgttgggtttttaatcaatatatatcaaattctatctattgtacataa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgttttcataatgttgggtttttaatcaatatatatcaaattctatctattgtacataa 323

                                                                       
Query: 124 gcttaatacaaaacttattatatgtctatattaatataataacattaataacattatatt 183
           |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 324 gcttaatacaaaacttatcatatgtctatgttaatataataacattaataacattatatt 383

                                                                       
Query: 184 aacatgttaataataatcttttatttaaggcagtgataaatggctttgccatgtaagatg 243
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacatgttaataataatattttatttaaggcagtgataaatggctttgccatgtaagatg 443

                                                                       
Query: 244 cattctttctgatttcaaaatattttgaagtttgatataattattatatgaagatttaac 303
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 444 cattctttctgatttcaaaatattttgaagtttgatataattattctatgaagatttaac 503

                                                                       
Query: 304 ttaagcagtatataaatttataacttcttttgttttcctgcatcagtaataattgtgtta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttaagcagtatataaatttataacttcttttgttttcctgcatcagtaataattgtgtta 563

                                                                       
Query: 364 aaataagctttatattcattttaactcatatagtgtctatataaaaatgtttaatcaatg 423
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 aaataagatttatattcattttaactcatatagtgtctatataaaaatgtttaaccaatg 623

                                                                       
Query: 424 gtagtaattgctttttaggatgtactcagagcataacaggcacatcttgagtctatatac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtagtaattgctttttaggatgtactcagagcataacaggcacatcttgagtctatatac 683

                                                                       
Query: 484 aatatctgtgattatatgtctaaatatcacatgtttgttccctaaggaactgaaactcaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatatctgtgattatatgtctaaatatcacatgtttgttccctaaggaactgaaactcaa 743

                                                                       
Query: 544 atttatatattgggtagtagaaacgttttctaaaaaatgtcactatgctttagattccac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atttatatattgggtagtagaaacgttttctaaaaaatgtcactatgctttagattccac 803

                                                      
Query: 604 tatttgggtggacatcagcagtatgtgaaaaatttataaaaaa 646
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tatttgggtggacatcagcagtatgtgaaaaatttataaaaaa 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)