BAC Information

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BAC

Clone NameMSMg01-533K05
Chromosome12 (Build37)
Map Location 15,992,728 - 16,115,661
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042426, LOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533K05.T7 (MSMg01no533_k05.b1)MSMg01-533K05.TJ (MSMg01no533_k05.g1)
ACCAG601513AG601514
length723719
length of high quality
(start - end)		494 (53 - 546)525 (84 - 608)
definitionCHROMAT_FILE: MSMg01no533_k05.b1 PHD_FILE: MSMg01no533_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:54 2005CHROMAT_FILE: MSMg01no533_k05.g1 PHD_FILE: MSMg01no533_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,115,228 - 16,115,661)(15,992,728 - 15,993,252)
sequence
GGAAGGGGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCA
GGATCCGCGGAATTCTGGTCTCTTTGATTCTGTAAGCTTCTAGAATGGTG
CAGTGGTAATGCAGCGGCTTTCTGGTGGATCCAGGGACTAGAGCTCAGAA
GCTGCACGCTGCTCACTCACGTTTACCTTGCATTCTGCCCAGAGCCGGTC
AGATGGCCGGGCTCCCGATCCAGAAGGCCTTCCCGTGTTCCTGACAACTG
GGGTATAAGGAATCCTCCCTTTCTCTCTCCTGTGCACTCTCTCTCCCCTT
CCCTCTTTCCCTGCCCTCGCTTCCCTGAGCATTAATGAAATGAGATTCAT
GTCGAAATTTGTTCTCCGTGAGTGTGTAGAAAAAGAAGAAAATAGTGAAT
TGCTCTGATTGTTTTTCCATAGGACACTCCAAACATAATGCAAGTAGTTT
TGGTGTTTCAATCAACACAAAATTAGTGGGCACCAATGGGGAAAAGCCAC
ATTTAACCTCATTTTCTAACGACTCCCGGATGTTTTATTCTGCAGAGCTT
TAGTTCAGATTATTGTTTACTAATTGAGATGAATTAGATGCTTTTCAGAT
GTTGCAGGATTTATGCACTCTTAATCTGGAGAGACTTTCTCTGACTGGAA
CATTCTACATTTGCACAGTGAACTATCGGAATACATACGAAAAGCTCTCA
GGATATTTGATCTACAGTGCTTT

NACTTTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTTGCTATTACACTA
GCCACCTGACCTATGGGAAAGAGAGACTAATTCGAGGGTTCAAACATTGT
TGGTGATGATGGGAAGAGCCAAGTTTTGTAACTAGTAACACTACTGTTCT
TTCCAAGTGTGATGTTTATAAACTCTTATTTGGATTTTCACATTTTTAAT
ATCTAATTCAATTGCAGAGGGTCTGTTTCTAGCAAACCCAGTTATGGACA
ACGTACAATAAAAAAAAAGTTTAGGAAAGAGAGCAAGGTGTGACCAAGAG
AGAAGCTGGTAGATGAAGGAGATGAGGTGACAACTTTGCACTTTAAAGAA
AGACACCTGGGGCAGGTGGGGATCAGAAGCAGGCTGACCCAGCCCAGGCA
CCCCTGGGACATAAGCAAAGCAGTTGGAGGAAAGCAATGGGAGGGAGGCA
AACCCCATTCTCTCCATTCACACTCTCCAGTGAGCACACCAAGCTCTGGT
TACTTCATCTTCAGCATCCAAGTTTAAAGGAAACTTGGACAAATAGGAGT
GAATCCTAGATAGCCAGAACCCTAACATCTGGAGGACCCTTCAAATAAAG
GGAGTAACAGCCTCAGGGAAGGTAAAGCCCAGCCTAGAGGGAAGTGGAAT
GAAGATTCTGTTTTTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_k05.b1 MSMg01no533_k05.b1 CHROMAT_FILE:
MSMg01no533_k05.b1 PHD_FILE: MSMg01no533_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:54 2005
         (494 letters)



>mm_chr12_16114768_16115661
          Length = 894

 Score =  777 bits (402), Expect = 0.0
 Identities = 426/434 (98%)
 Strand = Plus / Minus

                                                                       
Query: 61  agcggctttctggtggatccagggactagagctcagaagctgcacgctgctcactcacgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 agcggctttctggtggatccagggactagagctcagaagctgcacgctgctcactcacgt 835

                                                                       
Query: 121 ttaccttgcattctgcccagagccggtcagatggccgggctcccgatccagaaggccttc 180
           ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 834 ttaccttgcatcctgcccagagccggtcggatggccgggctcccgatccggaaggccttc 775

                                                                       
Query: 181 ccgtgttcctgacaactggggtataaggaatcctccctttctctctcctgtgcactctct 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 774 ccgtgttcctgacaactggggtgtaaggaatcctccctttctctctcctgtgcactctct 715

                                                                       
Query: 241 ctccccttccctctttccctgccctcgcttccctgagcattaatgaaatgagattcatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ctccccttccctctttccctgccctcgcttccctgagcattaatgaaatgagattcatgt 655

                                                                       
Query: 301 cgaaatttgttctccgtgagtgtgtagaaaaagaagaaaatagtgaattgctctgattgt 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cgaaatttgttttccgtgagtgtgtagaaaaagaagaaaatagtgaattgctctgattgt 595

                                                                       
Query: 361 ttttccataggacactccaaacataatgcaagtagttttggtgtttcaatcaacacaaaa 420
           | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 594 tcttccataggacactccaaacataatgcaagtagttttggtatttcaatcaacacaaaa 535

                                                                       
Query: 421 ttagtgggcaccaatggggaaaagccacatttaacctcattttctaacgactcccggatg 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttagtgagcaccaatggggaaaagccacatttaacctcattttctaacgactcccggatg 475

                         
Query: 481 ttttattctgcaga 494
           ||||||||||||||
Sbjct: 474 ttttattctgcaga 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no533_k05.g1 MSMg01no533_k05.g1 CHROMAT_FILE:
MSMg01no533_k05.g1 PHD_FILE: MSMg01no533_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:54 2005
         (525 letters)



>mm_chr12_15992528_15993452
          Length = 925

 Score = 1007 bits (521), Expect = 0.0
 Identities = 524/525 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttgctattacactagccacctgacctatgggaaagagagactaattcgagggttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttgctattacactagccacctgacctatgggaaagagagactaattcgagggttcaa 260

                                                                       
Query: 61  acattgttggtgatgatgggaagagccaagttttgtaactagtaacactactgttctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattgttggtgatgatgggaagagccaagttttgtaactagtaacactactgttctttc 320

                                                                       
Query: 121 caagtgtgatgtttataaactcttatttggattttcacatttttaatatctaattcaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagtgtgatgtttataaactcttatttggattttcacatttttaatatctaattcaatt 380

                                                                       
Query: 181 gcagagggtctgtttctagcaaacccagttatggacaacgtacaataaaaaaaaagttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagagggtctgtttctagcaaacccagttatggacaacgtacaataaaaaaaaagttta 440

                                                                       
Query: 241 ggaaagagagcaaggtgtgaccaagagagaagctggtagatgaaggagatgaggtgacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaagagagcaaggtgtgaccaagagagaagctggtagatgaaggagatgaggtgacaa 500

                                                                       
Query: 301 ctttgcactttaaagaaagacacctggggcaggtggggatcagaagcaggctgacccagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttgcactttaaagaaagacacctggggcaggtggggatcagaagcaggctgacccagc 560

                                                                       
Query: 361 ccaggcacccctgggacataagcaaagcagttggaggaaagcaatgggagggaggcaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggcacccctgggacataagcaaagcagttggaggaaagcaatgggagggaggcaaac 620

                                                                       
Query: 421 cccattctctccattcacactctccagtgagcacaccaagctctggttacttcatcttca 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 cccattctctccattcacactctccagtgagcacaccaagctctggctacttcatcttca 680

                                                        
Query: 481 gcatccaagtttaaaggaaacttggacaaataggagtgaatccta 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcatccaagtttaaaggaaacttggacaaataggagtgaatccta 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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