BAC Information

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BAC

Clone NameMSMg01-533O19
Chromosome12 (Build37)
Map Location 86,352,361 - 86,399,633
singlet/doubletdoublet
Overlap geneYlpm1
Upstream geneAcot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1
Downstream geneProx2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533O19.T7 (MSMg01no533_o19.b1)MSMg01-533O19.TJ (MSMg01no533_o19.g1)
ACCAG601732AG601733
length746763
length of high quality
(start - end)		616 (56 - 671)691 (73 - 763)
definitionCHROMAT_FILE: MSMg01no533_o19.b1 PHD_FILE: MSMg01no533_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:15 2005CHROMAT_FILE: MSMg01no533_o19.g1 PHD_FILE: MSMg01no533_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,352,361 - 86,352,945)(86,398,959 - 86,399,633)
sequence
NNNNNNNNTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCATTTTGTAGACCAGGCTACCATGTGTGTCATCACG
CCTGGCTCAGAAACATTTTGTTTGTTTGTTTTTTTGAGACAGGGTTTCTC
TGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGGCTT
GAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGT
CTGCGCCACTACACCCGGTCAGAAACATTTTTTAAAAAGTGTTATGGAGC
TGGAGAGATGGTTCATTGGTAAGAGCGCTGACTGTTCTTCCAGAGGTCCT
GAGCTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGG
ATCCAATGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTATAGTGTGTGT
GTGTGTGTATAAATAAATATATATATATATATATATATATATATATATAT
ATATATATATATATATACACATCTTATATATATATTTTTTAAACTGTTAT
GTTAGCTGGGTATAATAACAGGCTTATAATTGCAGCTGCTCAGGAGACTG
AAGCTGCTGGAGCTACAGGCGAAGTTCAGAGCCAATCTGGACAATATATT
GGGATTCTGTCTAAAAGATTAAGAGGAGATCTGTCTCTGTAGTTGGTAGT
GAAAAACTTGCCTGCACTACACAAAACCATCAGCTCAATACTTAGC

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTACCCCTGCTGGAACTATCTTTATTC
ATTCTTAAAACTATCATCCGTCTGCTGTTAAAGTAGCAGGCCACTTGAAA
ATAAATAGTTCAGAAAATAAATAGTTCAGCAGAGTAGAATTTTAAGGCTC
CTTTACCAGTTCTCTGATGTAAAACTAGTGTTGCAACGTGTTTCTCTTTA
AAAGGTAATTGTACATGTAATTAGGCTCCAAGTTGACTACATTTAAACAA
GTGAGATAAAATAAAAAAGCCACAAAGATGGAGCTGCCAAAACACTGTGC
ATCTCTCCTGTGTTGGCTACAAGTAGCAAGTAAGGTTATTAACTGTTAAG
AACAATGTGGGTCTTTATGTAAATTTCCCCTCACATTTTAAATCATGTAT
GTCAAAATGAAACCTGATTAAGAAAAATGAGACTATTAAAAAACATACTG
AGACTCAATTATCATTACCTTTAAAGCTTAGCTTTTAATCCACATTTTAA
GACATCTAGGAATGTAGAGGTCGACACCAATGCTATATAAACACAATTTC
TACCACGAATCTTCAATGTCATACATGGCTTTAAAGAGACCACTCCTTGT
AGACTATGCTTTAGGGAATAGGAATCAGGGATCTCGGTGTGTACATTTTC
ATTAAGAGAAGTAAGGAGAAGCAACTTTAGCAAGAGCTGAAATGTCAAAT
AAACCAAGCAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_o19.b1 MSMg01no533_o19.b1 CHROMAT_FILE:
MSMg01no533_o19.b1 PHD_FILE: MSMg01no533_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:15 2005
         (616 letters)



>mm_chr12_86352130_86353145
          Length = 1016

 Score =  984 bits (509), Expect = 0.0
 Identities = 573/619 (92%), Gaps = 40/619 (6%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattttgtagaccaggctaccatgtgtgtcatcacgcctggctcagaaacattt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ggaattcattttgtagaccaggctaccatgtgtgtcatcacgcctggctcagaaacattt 291

                                                                       
Query: 64  tgtttgtttgtttttttgagacagggtttctctgtatagccctggctgtcctggaactca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgtttgtttgtttttttgagacagggtttctctgtatagccctggctgtcctggaactca 351

                                                                       
Query: 124 ctttgtagaccaggctgggcttgaactcagaaatccgcctgcctctgcctcccgagtgct 183
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctttgtagaccaggctggccttgaactcagaaatccgcctgcctctgcctcccgagtgct 411

                                                                       
Query: 184 gggattaaaggtctgcgccactacacccggtcagaaacattttttaaaaagtgttatgga 243
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gggattaaaggtgtgcgccactacacccggtcagaaacattttttaaaaagtgttatgga 471

                                                                       
Query: 244 gctggagagatggttcattggtaagagcgctgactgttcttccagaggtcctgagctcag 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tctggagagatggttcattggtaagagcgctgactgttcttccagaggtcctgagctcag 531

                                                                       
Query: 304 ttcccagcaaccacatggtggctcacaaccatctgtaatgggatccaatgatgccctctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttcccagcaaccacatggtggctcacaaccatctgtaatgggatccaatgatgccctctt 591

                                                                       
Query: 364 ctggtgtgtctgaagacagctatagtgtgtgtgtgtgtgt------ataaataaatatat 417
           ||||||||||||||||||||||||||||||||||||||||      ||||||||||||||
Sbjct: 592 ctggtgtgtctgaagacagctatagtgtgtgtgtgtgtgtgtgtgtataaataaatatat 651

                                                                       
Query: 418 atatatatatatatatatatatatatatatatatatatatatatacacatcttatatata 477
           ||||||||| || | |||||||||||||||                              
Sbjct: 652 atatatatacatct-tatatatatatatat------------------------------ 680

                                                                       
Query: 478 tattttttaaactgttatgttagctgggtataataacaggcttataattgcagctgctca 537
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ---tttttaaactgttatgttagctgggtataataacaggcttataattgcagctgctca 737

                                                                       
Query: 538 ggagactgaagctgctggagctacaggcgaagttcagagccaatctggacaatatattgg 597
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 738 ggagactgaagctgctggagctacaggcgaagttcaaagccaatctggacaatatattgg 797

                              
Query: 598 gattctgtctaaaagatta 616
           |||||||||||||||||||
Sbjct: 798 gattctgtctaaaagatta 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 129
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no533_o19.g1 MSMg01no533_o19.g1 CHROMAT_FILE:
MSMg01no533_o19.g1 PHD_FILE: MSMg01no533_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:15 2005
         (691 letters)



>mm_chr12_86398669_86399759
          Length = 1091

 Score = 1263 bits (653), Expect = 0.0
 Identities = 674/691 (97%), Gaps = 16/691 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacccctgctggaactatctttattcattcttaaaactatcatccgtctgctgttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 attacccctgctggaactatctttattcattcttaaaactatcatccgtctgctgttaaa 906

                                                                       
Query: 61  gtagcaggccacttgaaaataaatagttcagaaaataaatagttcagcagagtagaattt 120
           ||||||||||||||                ||||||||||||||||||||||||||||||
Sbjct: 905 gtagcaggccactt----------------gaaaataaatagttcagcagagtagaattt 862

                                                                       
Query: 121 taaggctcctttaccagttctctgatgtaaaactagtgttgcaacgtgtttctctttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 taaggctcctttaccagttctctgatgtaaaactagtgttgcaacgtgtttctctttaaa 802

                                                                       
Query: 181 aggtaattgtacatgtaattaggctccaagttgactacatttaaacaagtgagataaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggtaattgtacatgtaattaggctccaagttgactacatttaaacaagtgagataaaat 742

                                                                       
Query: 241 aaaaaagccacaaagatggagctgccaaaacactgtgcatctctcctgtgttggctacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 aaaaaagccacaaagatggagctgccaaaacactgtgcatctctcctatgttggctacaa 682

                                                                       
Query: 301 gtagcaagtaaggttattaactgttaagaacaatgtgggtctttatgtaaatttcccctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtagcaagtaaggttattaactgttaagaacaatgtgggtctttatgtaaatttcccctc 622

                                                                       
Query: 361 acattttaaatcatgtatgtcaaaatgaaacctgattaagaaaaatgagactattaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acattttaaatcatgtatgtcaaaatgaaacctgattaagaaaaatgagactattaaaaa 562

                                                                       
Query: 421 acatactgagactcaattatcattacctttaaagcttagcttttaatccacattttaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatactgagactcaattatcattacctttaaagcttagcttttaatccacattttaaga 502

                                                                       
Query: 481 catctaggaatgtagaggtcgacaccaatgctatataaacacaatttctaccacgaatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catctaggaatgtagaggtcgacaccaatgctatataaacacaatttctaccacgaatct 442

                                                                       
Query: 541 tcaatgtcatacatggctttaaagagaccactccttgtagactatgctttagggaatagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaatgtcatacatggctttaaagagaccactccttgtagactatgctttagggaatagg 382

                                                                       
Query: 601 aatcagggatctcggtgtgtacattttcattaagagaagtaaggagaagcaactttagca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcagggatctcggtgtgtacattttcattaagagaagtaaggagaagcaactttagca 322

                                          
Query: 661 agagctgaaatgtcaaataaaccaagcaata 691
           |||||||||||||||||||||||||||||||
Sbjct: 321 agagctgaaatgtcaaataaaccaagcaata 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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