Query= MSMg01no534_a14.b1 MSMg01no534_a14.b1 CHROMAT_FILE:
MSMg01no534_a14.b1 PHD_FILE: MSMg01no534_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:23 2005
(498 letters)
>mm_chr12_85182449_85183346
Length = 898
Score = 922 bits (477), Expect = 0.0
Identities = 489/493 (99%)
Strand = Plus / Plus
Query: 6 aatgtatttttttcttatttaattccatcactgaagcagaatacgattttggaaggctcc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatgtatttttttcttatttaattccatcactgaagcagaatacgattttggaaggctcc 265
Query: 66 ttcactagcgtgagtcataggattacatattctatgggctatcagttttttgtttggttt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttcactagcgtgagtcataggattacatattctatgggctatcagttttttgtttggttt 325
Query: 126 gcttttatgtttttgtttatttccccacagagaaccacaaagatatgtgttatagtctcc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcttttatgtttttgtttatttccccacagagaaccacaaagatatgtgttatagtctcc 385
Query: 186 cctcccccagcctgaaacctgcttgctcaggggtgaagcttcccgctcaatctttctgcc 245
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 386 cctcccccagcctgaaacctgcttgctcaggggtggagcttcccgctcaatctttctgcc 445
Query: 246 acgcctactgctggaacctgctgctttgctgttccgaaggcatcacgtgatcaccctgct 305
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 446 acgcctactgctggaacctgccgctttgctgttctgaaggcatcacgtgatcaccctgct 505
Query: 306 actggattatttggcgggaattgggcccctcccccttcctttataactgagtgccgaaat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 actggattatttggcgggaattgggcccctcccccttcctttataactgagtgccgaaat 565
Query: 366 agtaaaaattgaaccttgagcagagagctttgtctgggttccttccttatctcacgaagc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 566 agtaaaaattgaaccttgagcagagagctttgtctgggttccttccttatctcccgaagc 625
Query: 426 ccagcccctcttctcttccaggtttccaaaatgcctttccaggctagaacccaggttgtg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccagcccctcttctcttccaggtttccaaaatgcctttccaggctagaacccaggttgtg 685
Query: 486 atctactggccag 498
|||||||||||||
Sbjct: 686 atctactggccag 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_a14.g1 MSMg01no534_a14.g1 CHROMAT_FILE:
MSMg01no534_a14.g1 PHD_FILE: MSMg01no534_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:24 2005
(578 letters)
>mm_chr12_85287409_85288386
Length = 978
Score = 1025 bits (530), Expect = 0.0
Identities = 565/578 (97%), Gaps = 5/578 (0%)
Strand = Plus / Minus
Query: 1 accgtgtagccaggctggcctcaaatgcctcaaatggaaatccgtttgcctcagcttcct 60
||||||||||||||||| ||||||| | || |||||||||||||||||||||||||||
Sbjct: 679 accgtgtagccaggctgacctcaaa-g--tc--atggaaatccgtttgcctcagcttcct 625
Query: 61 cagtgctgagattacaggcaagagccacactcagctctgcagtatttttatgaatgaaat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 624 cagtgctgagattacaggcaagagccacactcagctctgcagtatttttatgaatgaagt 565
Query: 121 tagggagagggaaatcaggcaaaataagaattacatcaggatttgtctaggggttacatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tagggagagggaaatcaggcaaaataagaattacatcaggatttgtctaggggttacatg 505
Query: 181 tgccatcatatgtctgtatttatgtgttcctacatacatctatatataatatggatgaat 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgccagcatatgtctgtatttatgtgttcctacatacatctatatataatatggatgaat 445
Query: 241 ggtagaaccatgataccatggtaatacaacagtgattattattggtaaatccaagtataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggtagaaccatgataccatggtaatacaacagtgattattattggtaaatccaagtataa 385
Query: 301 actttggaggacaaaacgccgttatcgataatcactgttatgtttcttcaattacttcta 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actttggaggacaaaatgccgttatcgataatcactgttatgtttcttcaattacttcta 325
Query: 361 cttatagtaatgtagccttgtaaagtgttcacccaaggctagagagatggctcagtggtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttatagtaatgtagccttgtaaagtgttcacccaaggctagagagatggctcagtggtt 265
Query: 421 ataatgagtaccgctctttcaggggaccaaagtttggtttccagcacccacgtaggtcgc 480
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 264 ataatgagtactgctctttcaggggaccaaagtttggttcccagcacccacgtaggtcgc 205
Query: 481 tcaaaacgtcctgtaacttcagctccaggatattgactccctcttctggcttgtacatac 540
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 tcacaacgtcctgtaacttcagctccaggatattgactccctcttgtggcttgtacatac 145
Query: 541 acctgcacacatgtccgaatacatacccctagtctttc 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 144 acctgcacacatgtccgaatacatacccctagtctttc 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
