Query= MSMg01no534_k15.b1 MSMg01no534_k15.b1 CHROMAT_FILE:
MSMg01no534_k15.b1 PHD_FILE: MSMg01no534_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:15 2005
(604 letters)
>mm_chr12_96568090_96569093
Length = 1004
Score = 1038 bits (537), Expect = 0.0
Identities = 589/615 (95%), Gaps = 16/615 (2%)
Strand = Plus / Plus
Query: 5 gaattcacagagctcttcctcctcatatgatgaaagttgttgatccactagtcagtgctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagagctcttcctcctcatatgatgaaagttgttgatccactagtcagtgctt 264
Query: 65 taaaatgcctatggtcaaaagtaatttagaattcagaatatttagatattatttattata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaatgcctatggtcaaaagtaatttagaattcagaatatttagatattatttattata 324
Query: 125 taatatgccaaagagatcttgccagactacagtaaaagacattaatcattccatagcagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatatgccaaagagatcttgccagactacagtaaaagacattaatcattccatagcagg 384
Query: 185 atgcatattcatattaagggatacagccacaattttaaaaacagtgatatcaattgcagc 244
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 atgcatattcatattaaaggatactgccacaattttaaaaacagtgatatcaattgcagc 444
Query: 245 agtctacataattagttcaagctatataagattttcagattttgctcttacctatactgt 304
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatctacataattagttcaagctatataagattttcagattttgctcttacctatactgt 504
Query: 305 atattgtatgtgtgtgtgtgtgtgtgtgtat--------------atatatatatatata 350
||||||||||||||||||||||||||||| | || ||| ||||||||
Sbjct: 505 atattgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtatatata 564
Query: 351 taaacattaaattgaaaagtgagtgaatgcctgttttttgccattatagggtagaaaacc 410
||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 565 taaacattaaattgacaagtgaatgaatgcctgttttt-gccattatagggtagaaaacc 623
Query: 411 aggaagatgtaatatattttgactgccaaaatgggaacaattagccttttcctggtaaga 470
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 624 aggaagatgtaatatattttgactgccaaaatgggaacaattagtcttttcctggtaaga 683
Query: 471 gtttcctaattggttatctaataagaaggaatctgccttagatacatatatacacacaag 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtttcctaattggttatctaataagaaggaatctgccttagatacatatatacacacaag 743
Query: 531 gcacactaaacagagatagcagattgtagttatatatttatgtagtacatatgaaaaaat 590
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 744 gcacactaaacagagatagcagattgtagttatatatttatgtattacatatgaaaaaat 803
Query: 591 aaaa-ctttgacctt 604
|||| ||||||||||
Sbjct: 804 aaaagctttgacctt 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_k15.g1 MSMg01no534_k15.g1 CHROMAT_FILE:
MSMg01no534_k15.g1 PHD_FILE: MSMg01no534_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:15 2005
(626 letters)
>mm_chr12_96686704_96687724
Length = 1021
Score = 986 bits (510), Expect = 0.0
Identities = 599/643 (93%), Gaps = 31/643 (4%)
Strand = Plus / Minus
Query: 4 agaaataaagcaacattctcaaggcctatcatagagtgaagagattaaacttaggaccca 63
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 636 agaaataaagcaacattctcaaggcctatcatagagtgaagagatcaaacttaggaccca 577
Query: 64 tcaatcctagagcctattccttaaagcataactgaactaaattgtgaaagtggaaataga 123
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 576 tcaatcctagagcctattccttaaagcataactgaactaaattgtgtaagtggaaataga 517
Query: 124 attgtgacaaagaagtaaaagtcaaatggagaatgtcaaatagatatgattaatttttct 183
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 516 attgtgacaaagaagtaaaagtcaaatggagagtgtcaaatagatatgatcaatttttct 457
Query: 184 attgtctgaaaaacgggagggatttgctcatatttcagtgctgaagagttataaacatag 243
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 456 attgtctgaaaaacaggagggatttgcttatatttcagtgctgaagagttataaacatag 397
Query: 244 gaaacaaaattgtggagttgtcactgaagtatgctgagagacggtgtggtggctacttga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaaacaaaattgtggagttgtcactgaagtatgctgagagacggtgtggtggctacttga 337
Query: 304 atattctaatatttttatttctttatttttctgaaacaaggattcacttgtttcacat-- 361
||||||||||| ||||||||||||||||||||||||| |||||||||| | ||
Sbjct: 336 atattctaata--tttatttctttatttttctgaaacagggattcactt-----atatag 284
Query: 362 gtgatcatggcttgacctcacttcaatcttactgtttcagtctgacccatcaaaagagaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtgatcatggcttgacctcacttcaatcttactgtttcagtctgacccatcaaaagagaa 224
Query: 422 ataaatttttcatttctctttttcctcttcctctcctccctctccctct-cctc-ccc-c 478
|||||||||||||||||||| | |||| ||| || |||||||||||||| |||| ||| |
Sbjct: 223 ataaatttttcatttctcttctccctc-tcc-ct-ctccctctccctctccctctccctc 167
Query: 479 tccctctccctctccctctcctcctcctcctgcttctctgcttcttctgcttcttcttct 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 166 tccctctccctctccctctcctcctcctcctgcttctctgcttcttctgcttctgcttct 107
Query: 539 c----------------cttctccttcctcctccttcttcttcctcctcctcctagnctt 582
| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 106 ccttcctcctcctcctacttctccttcctcctccttcttcttcctcctcctcctagtcct 47
Query: 583 cctcatccttctcctactactccttctgatgatgcctctgctt 625
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 cctcatccttctcctactactccttctgatgatgcctctgctt 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1021
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1011
Effective search space: 622776
Effective search space used: 622776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
