Query= MSMg01no536_c17.b1 MSMg01no536_c17.b1 CHROMAT_FILE:
MSMg01no536_c17.b1 PHD_FILE: MSMg01no536_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:12 2005
(524 letters)
>mm_chr12_36237609_36238532
Length = 924
Score = 955 bits (494), Expect = 0.0
Identities = 517/532 (97%), Gaps = 12/532 (2%)
Strand = Plus / Minus
Query: 5 gaattcagtaccatatatgacagacatgg------------attgtgggaaacagcaatt 52
||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 765 gaattcagtaccatatatgacagacatggatggtgctctatattgtgggaaacagcaatt 706
Query: 53 accgagaagctggggaagcctggagataagggaagtgcccagttccgtggaagaatgtgg 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 accgagaagctggggaagcctggagataagggaagtgcccagttccgtggaagaatgtgg 646
Query: 113 tgttcccagcagaagcagctttaccctacctgctgcctggagggatcacaggacagtcac 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tgttcccagcagaagcagctttaccctacctgctgcctggagggatcacaggacagtcac 586
Query: 173 ttagggtcacttcgaggatttggtaggacagttgcatttctacagagtatttcctgtttg 232
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 585 ttagggccacttcgaggatttggtaggacagttgcatttctacggagtatttcctgtttg 526
Query: 233 acattcagtaaatacccaacaagtgccacttacaataactgcatgagtgattttatgtta 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 acattcagtaaatacccaacaagtgccacttacaataactgcatgagtgattttatgtta 466
Query: 293 tgaatagttttattgttttgagtttcacttcttaaaattctctttgctttaactctcagc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tgaatagttttattgttttgagtttcacttcttaaaattctctttgctttaactctcagc 406
Query: 353 aattatgtgtttcacttctgactcaaaacttctgactcagccgagtcaaacagatagcac 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aattatgtgtttcacttctgactcaaaacttctgactcagccgagtcaaacagatagcac 346
Query: 413 aagaagcagagggtcagcaccacttcacagactgtctcagtgtgagtataaagacattta 472
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 345 aagaagcagagggtcagcaccacttcacagactgtctcagtgtgagtatgaagacattta 286
Query: 473 aagatcttttaccataacaaaaggcaggctatgaagctggaacaaatgaggc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aagatcttttaccataacaaaaggcaggctatgaagctggaacaaatgaggc 234
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_c17.g1 MSMg01no536_c17.g1 CHROMAT_FILE:
MSMg01no536_c17.g1 PHD_FILE: MSMg01no536_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:12 2005
(615 letters)
>mm_chr12_36077271_36078285
Length = 1015
Score = 1174 bits (607), Expect = 0.0
Identities = 613/615 (99%)
Strand = Plus / Plus
Query: 1 acatttccaaggacaatgtatttttagaaaatgttaatattcattagttatgggaaagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatttccaaggacaatgtatttttagaaaatgttaatattcattagttatgggaaagta 260
Query: 61 gggagagccaacacatcattgtctttgatctaagaattcaacttgtgtagagccaagctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagagccaacacatcattgtctttgatctaagaattcaacttgtgtagagccaagctt 320
Query: 121 cacaataaaccattattacttttaaaagtgggtggcattcatcaaatatttagaactgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaataaaccattattacttttaaaagtgggtggcattcatcaaatatttagaactgtt 380
Query: 181 atgattataaaacagtgtatcttggatctatatttttattgatatattttgttggggttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgattataaaacagtgtatcttggatctatatttttattgatatattttgttggggttt 440
Query: 241 ggtgggccccaaagggtatatacttggttgtgaaggctagtgttcctttcatgtctaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgggccccaaagggtatatacttggttgtgaaggctagtgttcctttcatgtctaatc 500
Query: 301 aagccacagtgccactagttcttaacttaaaattgcttgacttgaaaaagtaataaacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagccacagtgccactagttcttaacttaaaattgcttgacttgaaaaagtaataaacat 560
Query: 361 tcattaaaaactacagagtagtaaagcctcttccaccccctagaatagaaatacaccgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattaaaaactacagagtagtaaagcctcttccaccccctagaatagaaatacaccgta 620
Query: 421 aggagctctaccctgatgctggataagagcaccaagctgcagtatcccaccagtgtcagg 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 aggagctctaccctgatgctggataagagcaccaagctgcagtattccaccagtgtcagg 680
Query: 481 ttcatgtattaaacaacccacacttgatcatcagtagtttaatttgtcaatgcatttcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcatgtattaaacaacccacacttgatcatcagtagtttaatttgtcaatgcatttcca 740
Query: 541 cttttggcatatgtgtcataaccctatgcaaacctagaactatagttttatactgaagaa 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 cttttggcatatgtgtcataaccctatgcaaacctagaactatcgttttatactgaagaa 800
Query: 601 tgggactaaatgaaa 615
|||||||||||||||
Sbjct: 801 tgggactaaatgaaa 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
