Query= MSMg01no536_d18.b1 MSMg01no536_d18.b1 CHROMAT_FILE:
MSMg01no536_d18.b1 PHD_FILE: MSMg01no536_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:17 2005
(619 letters)
>mm_chr12_33942357_33943377
Length = 1021
Score = 1139 bits (589), Expect = 0.0
Identities = 607/613 (99%), Gaps = 2/613 (0%)
Strand = Plus / Minus
Query: 9 ggaattctgggaaatg-tgtcagtcttgttcccatggatacctaacagagcaccttgggt 67
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ggaattctgggaaatgcagtcagtcttgttcccatggatacctaacagagcaccttgggt 762
Query: 68 tttgcctgatcactgggttcccacctgggttacact-ggtgggattctggcttccatgtt 126
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 761 tttgcctgatcactaggttcccacctgggttacactgggtgggattctggcttccatgtt 702
Query: 127 tcctccaatgtgtagttatgactaagatgttctgtcaactgaaaaggtagttcgaacctc 186
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 701 tcctccaatgtgtagttatgactaagatgttctgtcaactgaaaaggtggttcgaacctc 642
Query: 187 actactgacttcacttgggttcctcgaagatcaattctactggttctttggtcctaaagg 246
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 actactgacttcacttggattcctcgaagatcaattctactggttctttggtcctaaagg 582
Query: 247 tagcataacatgtcctgtttgtctttgtttccttcctttctggtgctacagatggcaccc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tagcataacatgtcctgtttgtctttgtttccttcctttctggtgctacagatggcaccc 522
Query: 307 agggccttgcacacgtcccaaccactcgggttgtttttttctaaggccctcaccttgtgt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 agggccttgcacacgtcccaaccactcgggttgtttttttctaaggccctcaccttgtgt 462
Query: 367 ttctcatggtcctgccttccatgtgtgctgtgtctcttggttaatgtagccacagccccc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttctcatggtcctgccttccatgtgtgctgtgtctcttggttaatgtagccacagccccc 402
Query: 427 tgttgccctcagcacagcacctgtgccctgcatgaccgatccctagtgccctggtgctaa 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgttgccctcagcacagcacctgtgccctgcatgaccgatccctagtgccctggtgctaa 342
Query: 487 gtggattaggaacaaggggtggaagattctacactcatcctgatgccacccagattatgg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtggattaggaacaaggggtggaagattctacactcatcctgatgccacccagattatgg 282
Query: 547 ccaacaactcggacattttcactgttaagcttctaaatgaagcagctctttcttgcaggc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ccaacaactcggacattttcactgttaagcttctaaatgaagcagctctttcttgcaggc 222
Query: 607 acacactaattaa 619
|||||||||||||
Sbjct: 221 acacactaattaa 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1021
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1011
Effective search space: 615699
Effective search space used: 615699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_d18.g1 MSMg01no536_d18.g1 CHROMAT_FILE:
MSMg01no536_d18.g1 PHD_FILE: MSMg01no536_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:17 2005
(528 letters)
>mm_chr12_33769362_33770289
Length = 928
Score = 1021 bits (528), Expect = 0.0
Identities = 528/528 (100%)
Strand = Plus / Plus
Query: 1 tggggtaaagagtaaatttggctttatgtatatggaatttgacatcatcctgaacaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggggtaaagagtaaatttggctttatgtatatggaatttgacatcatcctgaacaaagc 260
Query: 61 tgaaaaaattagtttgggtccacagtgctcagaaccgttactgggaaaagaggagtcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaaaaattagtttgggtccacagtgctcagaaccgttactgggaaaagaggagtcaga 320
Query: 121 ctaagtcatgggaggatgaaggagagaaaggccttcacaggaccttggagagctcctctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaagtcatgggaggatgaaggagagaaaggccttcacaggaccttggagagctcctctg 380
Query: 181 ctgctgcagggtcctacttgctgtccctcccctggctggatggctcagagctttccttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgctgcagggtcctacttgctgtccctcccctggctggatggctcagagctttccttat 440
Query: 241 agagtccaggagaaaactcctggcccatgactagccctgtagggctgaggagacccttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagtccaggagaaaactcctggcccatgactagccctgtagggctgaggagacccttgg 500
Query: 301 cttggcagtagtggggtctacttgtgaattaacggctcctaaagatgttaaaaatgagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttggcagtagtggggtctacttgtgaattaacggctcctaaagatgttaaaaatgagag 560
Query: 361 ctccagagcttcttgccctggtttccagtcacagctcagctacacattagtggtgaaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctccagagcttcttgccctggtttccagtcacagctcagctacacattagtggtgaaagc 620
Query: 421 caggacaaactacacagccttcctgtgcttcatttctgcatctgtggataggaggtgatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggacaaactacacagccttcctgtgcttcatttctgcatctgtggataggaggtgatg 680
Query: 481 ttaaatcacaaccttgtaccttgaggattccaagggcaggagtgtgag 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaaatcacaaccttgtaccttgaggattccaagggcaggagtgtgag 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
