Query= MSMg01no536_f08.b1 MSMg01no536_f08.b1 CHROMAT_FILE:
MSMg01no536_f08.b1 PHD_FILE: MSMg01no536_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:24 2005
(286 letters)
>mm_chr12_100241043_100241729
Length = 687
Score = 520 bits (269), Expect = e-152
Identities = 281/285 (98%), Gaps = 3/285 (1%)
Strand = Plus / Plus
Query: 4 ggaattcca-tcctctcttcacttctgcaaagctttgatcttcaatttaaaagttacaga 62
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccattcc-cgcttcacttctgcaaagctttgatcttcaatttaaaagttacaga 262
Query: 63 ggaaaacagactcactttggtcacaaaggatgaaaacactctactagttagatgtgtgtt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggaaaacagactcactttggtcacaaaggatgaaaacactctactagttagatgtgtgtt 322
Query: 123 gtattctaccaat-aggggaggatgtagagatgtgtggttcatccaataggggagggtgt 181
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtattctaccaattaggggaggatgtagagatgtgtggttcatccaataggggagggtgt 382
Query: 182 ggagagtgggcgtggtccatccaatggagggggtgtagagagtgggcgtggttcattctc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggagagtgggcgtggtccatccaatggagggggtgtagagagtgggcgtggttcattctc 442
Query: 242 attttctccctgatgtctctcctggcactgagacctactctgtgg 286
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 attttctccctgatgtctctcctggcactgagacctactctgtgg 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space: 187806
Effective search space used: 187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no536_f08.g1 MSMg01no536_f08.g1 CHROMAT_FILE:
MSMg01no536_f08.g1 PHD_FILE: MSMg01no536_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:24 2005
(490 letters)
>mm_chr12_100371187_100372076
Length = 890
Score = 899 bits (465), Expect = 0.0
Identities = 485/493 (98%), Gaps = 4/493 (0%)
Strand = Plus / Minus
Query: 1 attggatgaggtgagtttggcttgaaggtacagaaactgaacctggggaggtggtgggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attggatgaggtgagtttggcttgaaggtacagaaactgaacctggggaggtggtgggta 442
Query: 61 aagcctctcttctggcagggttactaaacttgggagccaggcaggagcactcaggctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcctctcttctggcagggttactaaacttgggagccaggcaggagcactcaggctcac 382
Query: 121 ataagccaaaccatatcaagatggtgtcattcctccgctccaagaactccagtgtctttc 180
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 381 ataagccaaaccatatcaagatggcgtcattcctctgctccaagaactccagtgtctttc 322
Query: 181 ctcaagcttgcctacttcttaccttggctacaaggccctttgtgtgctctggcctggcct 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ctcaagcttgcctacttcttaccttggctacaaggacctttgtgtgctctggcctggcct 262
Query: 241 ttatctccgcctttacacgtcatgcccttctctgccactgtcttacccacacaggcctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatctccgcctttacacgtcatgcccttctctgccactgtcttacccacacaggcctgc 202
Query: 301 ttttttttttcttttttttttaattaggtattttcctcgtttacattttcaacgctatcc 360
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ttttttttttcttttttttttaa-taggtattttcctcgtttacattgtcaacgctatcc 143
Query: 361 caaaagtccgccatacccacc---cccccccaatcccctacccacccactcccctagcct 417
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 142 caaaagtccgccatacccaccccacccccccaatcccctacccacccactcccctagcct 83
Query: 418 tcacatttacatgtccagtcacaccccggaggtctgcttcagaactcaccttgaacttgg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 tcacatttacatgtccagtcacaccccggaggtctgcttcagaactcaccttgaacttgg 23
Query: 478 gaggggaaccttc 490
|||||||||||||
Sbjct: 22 gaggggaaccttc 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
