BAC Information

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BAC

Clone NameMSMg01-538C19
Chromosome12 (Build37)
Map Location 51,515,989 - 51,516,398
singlet/doubletsinglet
Overlap genePrkcm
Upstream geneLOC665071, LOC665077, LOC100039455
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538C19.T7 (MSMg01no538_c19.b1)MSMg01-538C19.TJ (MSMg01no538_c19.g1)
ACCAG604968AG604969
length893739
length of high quality
(start - end)		---440 (67 - 506)
definitionCHROMAT_FILE: MSMg01no538_c19.b1 PHD_FILE: MSMg01no538_c19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:46 2005CHROMAT_FILE: MSMg01no538_c19.g1 PHD_FILE: MSMg01no538_c19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCCCGGCCCCAATTTGTNCCTCTCTCTTCGCGANANTTCCTTTGGGGT
NNNGTCCTCTTAATAAATTTTTCGGGGCCGGCCTTAATAAGGAAATTCCA
CTTATTTTCGCGAGAGAAGGAATCCGGCGGGAATTCCTTTCATTATTGCG
AAACCATATTTGGTTGGGACCTCATAAGTTAAAAACAGGAAAGAGGGGGT
CCTTTAAAAAAAGCCCACAAGGACCCCCCCTTTTGGAATTTAAAAAAAAA
AGGGGTTTCACCCCCCCTTTTTTTTTTATTTTTTTTAAAAAAAATTTTTT
TGGGAGAGGGGGGGGGGGGGGGGGAAAAAATAATAAAAAAAAGGGTGGGT
GGCGTTGTGTCGGGGTGTTCCTTTCTTTGGTTGGTCCCCCCGGCGGTNTA
TTTTTTATTTTTATTATATATCCTTAGGTGNGAGGTAGTCATCCACGCCG
CTCTTCTGTCCTCCTTTGAGCTTTCGTTCTCCCCCCCCACCCCAAAAAAA
AAAAATAAAAAACNTTTTGTGGGGGGGAAGTGATCTTTGTTGTGTTATTT
TCTCCATACCACCCGCGCGGGGGGGTGGGTGGAAGCCACCTCCCCGCGCC
CGCGGTGTGGGGGGGAAAAAAGATATATTTTTTTTTTGTTTTTTTTTCTT
TCTCCTACCAAAAAACAAAGAGAAAGTAGTTTGTTCTTCTCCCCCTCCCC
CCCACACACAAAAAAGATGACTTGCTATATCTTTATTATTATTTTTTTTT
GGGTGGGGTCGGGGTGTGTATTTGATATTATTTAATTTATACTTATGCGC
ACCACAGACCACCTCCCACCACCCNTCTCCACTCCCCACTCAATCATCCT
TATTTATACTTTTAGGTTGTTTTTGTTTATCAGCTTAATATAN

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTTCTTAATGTTTGGAGCAATTTATGAAAGCTT
TCAAAGTAATGACACATGGAACAACCTTTGAAAAATATAAGGAGATGTAG
ATCTGCTGAGTGCTAAAGTAGTCTTGGAAGTTACATTTGCTTTATATTGC
CTCACTCCTTTGAGTAAACAAAAGGGGAGGGTAAGAGAGACCTAGGTTTC
CTTAAGTGATCCATCCTTTTGCAGGGAAAGCATCAGGACTGTTGAAGCAT
TTTCACAAATTTCAGGCCCTGTTCTTTCAAATGTCAGTTACCAACACCCT
ACAAAGCTTGGTCCCAAAGGGAAACATGATATAAGTAAGTTTACCTTTAA
AAAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGGGAAAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGGGAG
AGANNNNNNNNNNNNNNNNNNNNNGGAGGAGGGGAGGGAGAAGGGGAAGA
GAAAAAGGAGAGGGAGAGAGAGGAGAAGGAAGAGAGAGAAGAAAAGAAAA
GGAAAAGGGGGAGGGAGGAAGAAGGAAGGAGGAAGAAAAAAGAGGGAAAA
GNNAAAGAGAGTAGAGAAGGAGGAGAAGGAGAAGAGAGAGAGAGAGAAGA
AAAAAGGAAGAAAGAAGAAAAAAGAGAAAAGGGAGGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_c19.g1 MSMg01no538_c19.g1 CHROMAT_FILE:
MSMg01no538_c19.g1 PHD_FILE: MSMg01no538_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:46 2005
         (440 letters)



>mm_chr12_51515789_51516628
          Length = 840

 Score =  737 bits (381), Expect = 0.0
 Identities = 406/417 (97%), Gaps = 7/417 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcttaatgtttggagcaatttatgaaagctttcaaagtaatgacacatggaacaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 atttcttaatgtttggagcaatttatgaaagctttcaaagtaatgacacatggaacaccc 260

                                                                       
Query: 61  tttgaaaaatataaggagatgtagatctgctgagtgctaaagtagtcttggaagttacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgaaaaatataaggagatgtagatctgctgagtgctaaagtagtcttggaagttacat 320

                                                                       
Query: 121 ttgctttatattgcctcactcctttgagtaaacaaaaggggagggtaagagagacctagg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ttgctttatattgcctcactcctttgagtaaacagaaggggagggtaagagagacctagg 380

                                                                       
Query: 181 tttccttaagtgatccatccttttgcagggaaagcatcaggactgttgaagcattttcac 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttccttaagtgatccattcttttgcagggaaagcatcaggactgttgaagcattttcac 440

                                                                       
Query: 241 aaatttcaggccctgttctttcaaatgtcagttaccaacaccctacaaagcttggtccca 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattgcaggccctgttctttcaaatgtcagttaccaacaccctacaaagcttggtccca 500

                                                                       
Query: 301 aagggaaacatgatataagtaagtttacctttaaaaagagagagagagagagagagagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagggaaacatgatataagtaagtttacctttaaaaagagagagagagagagagagagag 560

                                                                    
Query: 361 agggagagagagagagagagagagagagagagagggaaagagagagagagaaagaga 417
           ||  ||||||||||||||||||||||||||||||    |||||||||||||| ||||
Sbjct: 561 ag--agagagagagagagagagagagagagagag----agagagagagagaa-gaga 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 107
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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