Query= MSMg01no538_l07.b1 MSMg01no538_l07.b1 CHROMAT_FILE:
MSMg01no538_l07.b1 PHD_FILE: MSMg01no538_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:25 2005
(663 letters)
>mm_chr12_52173180_52174242
Length = 1063
Score = 1151 bits (595), Expect = 0.0
Identities = 642/659 (97%), Gaps = 6/659 (0%)
Strand = Plus / Minus
Query: 8 ttctctgtgctatagggacctgtagcaaacatgcctagtctccaattagtggtttaggtt 67
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1063 ttctctgtgctatagggacctgtagcaaacatgtctagtctccaattagtggtttaggtt 1004
Query: 68 gggtttcaggtttaccatcgttaagaatataacttatgataaatttgtaaatttaatagt 127
| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 gagtttcaggtttatcataattaagaatataacttatgataaatttgtaaatttaatagt 944
Query: 128 atttctaggcagttttctgcaaagtgggaaaaattataatcatagttactggaaaataaa 187
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 atttctatgcagttttctacaaagtgggaaaaattataatcatagttactggaaaataaa 884
Query: 188 gacagacatgtcagctctggcccacatgtggacattcatagttatgagtaaccagcacaa 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 gacagacatgtcagctctggcccacatgtggacattcatagttatgagtaaccagcacaa 824
Query: 248 aactgtaaacttgcttaaaatacttgatgattttgcggtagttttggtaactcacctgct 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 aactgtaaacttgcttaaaatacttgatgattttgcggtagttttggtaactcacctgct 764
Query: 308 cttgaacgtgaagtttgtagataaaaatgtcatgttggattctcaaaaaggttggacaca 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 cttgaacgtgaagtttgtagataaaaatgtcatgttggattctcaaaaaggttggacaca 704
Query: 368 cctgaaataatttagagtggtgcccattacttcctaatcatccagtaagtgctactattc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 cctgaaataatttagagtggtgcccattacttcctaatcatccagtaagtgctactattc 644
Query: 428 aacaagggaa-gagaagaaacagctcacaaatgtgtgcaagacagtatgttacatctaaa 486
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aacaa-ggaaggagaagaaacagctcacaaatgtgtgcaagacagtatgttacatctaaa 585
Query: 487 aatctaaataaacagctggctgtagaggctcaagcacttaagtccagcactcgtgaggcg 546
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 584 aatctaaataaacagctggctgtagaggctcaagcacttaagtccagcacccgtgaggcg 525
Query: 547 gaggcataagattgtgaagtcaagaacagcttgggctgtcagaggaaacagt--ctcata 604
|||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct: 524 gaggcataagattgtgaagtcaaggacagcctgggctgtcagaggaaacagtgtctcata 465
Query: 605 aacagagctaaacagaacaaaacccccaatgtataacagattaaaggatttttttttca 663
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 464 aacagagctaaacagaacaaaaaccccaatgtataacagattaaagg--ttttttttca 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_l07.g1 MSMg01no538_l07.g1 CHROMAT_FILE:
MSMg01no538_l07.g1 PHD_FILE: MSMg01no538_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:25 2005
(661 letters)
>mm_chr12_52004325_52005385
Length = 1061
Score = 1166 bits (603), Expect = 0.0
Identities = 649/675 (96%), Gaps = 19/675 (2%)
Strand = Plus / Plus
Query: 1 ttcttccaggaataagccccttaattatttaaccactaacaagcagtctgtgatgaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ttcttccaggaataagccccttaattatttaaccactaacaagcagtctgtgatgaaatc 251
Query: 61 atatacacagcagcagtaacactaaatgaactcagcaggttgtcttcatatttgtgtgtg 120
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 252 atatacacagcagcagtaacactaaatgcactcagcagattgtcttcatatttgtgtgtg 311
Query: 121 tgtgtgtgtgtgtgtgtgtg--------------tacacatatagtggcttgatgtccct 166
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 312 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacacatatagtggcttgatgtccct 371
Query: 167 caaattctcagaaatttggatacttggtccctaattggtgatgatgtttgaggaagctta 226
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 372 caaattctcagaaatttggatacttggtccctaattagtgatgatgtttgaggaagctta 431
Query: 227 gagggaatatacccttgctgaaggaagtgttactggggtgggatttgaagtttaaaagct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gagggaatatacccttgctgaaggaagtgttactggggtgggatttgaagtttaaaagct 491
Query: 287 ttacctcctaccacccctagtttcttctgtctgcttcctgtttaggggcttagatatgag 346
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 492 ttacctcctaccacccctagtttcttctgtctgcttcctgtttaggggcttacatatgag 551
Query: 347 ctttcagctgctgctccagccaccatgtctgcctactgccatgtttttccactgtgatag 406
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctttcagctgcttctccagccaccatgtctgcctactgccatgtttttccactgtgatag 611
Query: 407 aaatggactcttattcttctgaaactataagccaaaatcaaacccttccttttataaatt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aaatggactcttattcttctgaaactataagccaaaatcaaacccttccttttataaatt 671
Query: 467 gccttagtcagttagttatattttattaaagcaacagaaaagtaacacacacataacaat 526
||| |||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gccctagt----ta-ttatattttattaaagcaacagaaaagtaacacacacataacaat 726
Query: 527 aaaattgaaaaggattggagagaggaacatgggaggggttgaaggttggacacataggaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aaaattgaaaaggattggagagaggaacatgggaggggttgaaggttggacacataggaa 786
Query: 587 gaaaagaaaagggggaaaataatgtaaccatacttaaattaaaatttaaattactttaaa 646
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gaaaagaaaaggggaaaaataatgtaaccatacttaaattaaaatttaaattactttaaa 846
Query: 647 taacagttaggtatt 661
|||||||||||||||
Sbjct: 847 taacagttaggtatt 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
