BAC Information

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BAC

Clone NameMSMg01-539G22
Chromosome12 (Build37)
Map Location 101,943,245 - 102,104,273
singlet/doubletdoublet
Overlap geneRps6ka5, LOC100040123, 9030617O03Rik, EG667148
Upstream gene2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b
Downstream geneGpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5, Trip11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539G22.T7 (MSMg01no539_g22.b1)MSMg01-539G22.TJ (MSMg01no539_g22.g1)
ACCAG605926AG605927
length785791
length of high quality
(start - end)		541 (47 - 587)588 (71 - 658)
definitionCHROMAT_FILE: MSMg01no539_g22.b1 PHD_FILE: MSMg01no539_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:23 2005CHROMAT_FILE: MSMg01no539_g22.g1 PHD_FILE: MSMg01no539_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,943,245 - 101,943,781)(102,103,771 - 102,104,273)
sequence
NCCCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGCCCCTTCTAGATAAAAGTTGCTATAGGATTTGTATTAACTTC
CTACACTCCCAGCACTTCGTGCTTACAGACCCTCCCATCTTTATTTCCTG
CTGCGTGAGCACTGGGGAAATCCTAGAGCAAAAGATGCACAGGAGCATGC
CTGAGACTAGACACTGCTGGGGAAGAGCAAGCCAAACCCTGCAATAGAAG
AGTGTGAGGATGATATGAGTCAGCGCTTAAGAGGCAACTGACAGAAAATC
TTTTCCTGCCTTTTGTTACTGAGTTTACAAGGGATCAGAGTTGCTAGTAC
GTACTAAAAACAAAGAAGTTACCTAGATCTCAAGGGATAGACTGATGTTT
CTTGTCACTTCTATGATTACTGTAAAATGAACAAGGCTTGAAACAACCAT
AACCAACAAGTGAAAGCCAAATGAAGATTTATATTCCTCAGAGACGAGAG
TCTGATTTACACTAGTCAAGCAATACTCAGCTTTCCATGACTTCTCAGCC
ATTCACTGCATACCAGTAAGTGTATCCCAAATGCCACTCCAGTCTGTTAT
AATAGTTATATCCACCTTGTTACAAATGGTAAAAGCACTATACAATTTTC
TTGTCTCTGCCACTGAAGAATACCATCATTTCTAAGAATATTACTGAATC
CTATGAAATTCCAGAATAGTACCTCTTAGTAATTCCACACTGTCTGCTTC
ATCAAGAACTTCTTTATTACCTGGNTGAGGCTTCT

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACTGGAGAGAGAGTGGAGCTGTGCAGTGG
GAGGAGCCAGGTAAGCAAATATACAAACACAAACCCCAGGGAGTACAAAG
GGATACAGCCAAACACGGCCAAGGAAGACTACCATATCATAGTTACACTC
GAATCTCTGACACTGGTAGATGTCTATGTCTCTGGTCGCGTCTTACAGCT
GTCATCAGCTGGCTTGTCAGGGCTATACAAATCGTGGGGGCTGCGTCATC
AACAGAACACTCAAGGGAAAAGCGATTCTTGCTTTGGTTGAATAATCTAG
TCTGCCATCCTGTTGCAGATGGCTTGTGTGTCTTAGCTCCTGGAGTCCTT
AAAGCAAACCAACGAGGCATAGCATCATTGTCTACATGTGAGCAACTCAG
AAACAGACACAGAAGGGTAAAGATCACACAGCGAGTGAGTTGTAGACATA
TGATGTAATTCAAGCTATTCCCTTCAGAGCTCACATTCCTTTTTCTTTTA
AAAAATGATTTTTTAAAGTTTTTAAATTGTGTTAAAATCTACGTGACATG
AATATATTATTAAAACACCAGATGGATCCTTCCCTGTTCTCACACCAGCA
ACAGAGAGGGTAATGTGACCACTGAGGGTGTGGGGGTCTCTCTCTGCCAG
GAATCTCACAGTTTTATAGCAGCAGATAGCTAACCCAAGTGTGCTCCAAT
CCAGTTCAGTTGCACCTCAATGTCAGAGCCCAGGGGCTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_g22.b1 MSMg01no539_g22.b1 CHROMAT_FILE:
MSMg01no539_g22.b1 PHD_FILE: MSMg01no539_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:23 2005
         (541 letters)



>mm_chr12_101943041_101943981
          Length = 941

 Score = 1023 bits (529), Expect = 0.0
 Identities = 535/537 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgccccttctagataaaagttgctataggatttgtattaacttcctacactccc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcccctactagataaaagttgctataggatttgtattaacttcctacactccc 264

                                                                       
Query: 65  agcacttcgtgcttacagaccctcccatctttatttcctgctgcgtgagcactggggaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcacttcgtgcttacagaccctcccatctttatttcctgctgcgtgagcactggggaaa 324

                                                                       
Query: 125 tcctagagcaaaagatgcacaggagcatgcctgagactagacactgctggggaagagcaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 tcctagagcaaaagatgcacaggagcatgcctgagactagacactgctggggaagaccaa 384

                                                                       
Query: 185 gccaaaccctgcaatagaagagtgtgaggatgatatgagtcagcgcttaagaggcaactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccaaaccctgcaatagaagagtgtgaggatgatatgagtcagcgcttaagaggcaactg 444

                                                                       
Query: 245 acagaaaatcttttcctgccttttgttactgagtttacaagggatcagagttgctagtac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagaaaatcttttcctgccttttgttactgagtttacaagggatcagagttgctagtac 504

                                                                       
Query: 305 gtactaaaaacaaagaagttacctagatctcaagggatagactgatgtttcttgtcactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtactaaaaacaaagaagttacctagatctcaagggatagactgatgtttcttgtcactt 564

                                                                       
Query: 365 ctatgattactgtaaaatgaacaaggcttgaaacaaccataaccaacaagtgaaagccaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctatgattactgtaaaatgaacaaggcttgaaacaaccataaccaacaagtgaaagccaa 624

                                                                       
Query: 425 atgaagatttatattcctcagagacgagagtctgatttacactagtcaagcaatactcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgaagatttatattcctcagagacgagagtctgatttacactagtcaagcaatactcag 684

                                                                    
Query: 485 ctttccatgacttctcagccattcactgcataccagtaagtgtatcccaaatgccac 541
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctttccatgacttctcagccattcactgcataccagtaagtgtatcccaaatgccac 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no539_g22.g1 MSMg01no539_g22.g1 CHROMAT_FILE:
MSMg01no539_g22.g1 PHD_FILE: MSMg01no539_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:23 2005
         (588 letters)



>mm_chr12_102103771_102104758
          Length = 988

 Score =  934 bits (483), Expect = 0.0
 Identities = 498/503 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactggagagagagtggagctgtgcagtgggaggagccaggtaagcaaatatacaaacac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 503 aactggagagagagtggagctgtgcagtgggaggagccaggtaagcaaacgtacaaacac 444

                                                                       
Query: 61  aaaccccagggagtacaaagggatacagccaaacacggccaaggaagactaccatatcat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 443 aaaccccagggagtacaaagggatacagccaaacacggccaaggaagactactatatcat 384

                                                                       
Query: 121 agttacactcgaatctctgacactggtagatgtctatgtctctggtcgcgtcttacagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agttacactcgaatctctgacactggtagatgtctatgtctctggtcgcgtcttacagct 324

                                                                       
Query: 181 gtcatcagctggcttgtcagggctatacaaatcgtgggggctgcgtcatcaacagaacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtcatcagctggcttgtcagggctatacaaatcgtgggggctgcgtcatcaacagaacac 264

                                                                       
Query: 241 tcaagggaaaagcgattcttgctttggttgaataatctagtctgccatcctgttgcagat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 tcaagggaaaagcgattcttgctttggttgaataatctagtctgccatcctgctgcagat 204

                                                                       
Query: 301 ggcttgtgtgtcttagctcctggagtccttaaagcaaaccaacgaggcatagcatcattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggcttgtgtgtcttagctcctggagtccttaaagcaaaccaacgaggcatagcatcattg 144

                                                                       
Query: 361 tctacatgtgagcaactcagaaacagacacagaagggtaaagatcacacagcgagtgagt 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 143 tctacatgtgagcaactcagaaacagacacagaagggaaaagatcacacagcgagtgagt 84

                                                                       
Query: 421 tgtagacatatgatgtaattcaagctattcccttcagagctcacattcctttttctttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  tgtagacatatgatgtaattcaagctattcccttcagagctcacattcctttttctttta 24

                                  
Query: 481 aaaaatgattttttaaagttttt 503
           |||||||||||||||||||||||
Sbjct: 23  aaaaatgattttttaaagttttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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