BAC Information

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BAC

Clone NameMSMg01-540I14
Chromosome12 (Build37)
Map Location 32,177,567 - 32,178,197
singlet/doubletsinglet
Overlap geneCbll1
Upstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3
Downstream geneSlc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg, 2010109K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540I14.T7 (MSMg01no540_i14.b1)MSMg01-540I14.TJ (MSMg01no540_i14.g1)
ACCAG606764AG606765
length718716
length of high quality
(start - end)		642 (77 - 718)634 (83 - 716)
definitionCHROMAT_FILE: MSMg01no540_i14.b1 PHD_FILE: MSMg01no540_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:50 2005CHROMAT_FILE: MSMg01no540_i14.g1 PHD_FILE: MSMg01no540_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTAACTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGG
ATCCGCGGAATTCTCACCGTTCGCATACTGAATGGCGGAGAAACACCTGA
AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCAAGGATGTGAAGAAAGAGGAACACTCCTCCATT
GCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGG
TTCCTCAGAAAATTGGACATAGTACTACCGGAAGATCCAGCAATACCTCT
TCTGGGCATATATCCAGAAGATGCCCCAACCGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTA
CACAATGGAGTACTACTCAGCTATTAAAAACAATGAGTTCATGAAATTCT
TAGGCAAATGGATGGATCTGGAGGATACCATCCTGAGTAAGGTAACCCAA
TCACAAAAGAACACACATGATATGCACTCACTGATAAGGGGATATTAGCC
CAGAAACATAGAATACCCAAGATACAATGTGTAAAACACAAGAAAATCAA
GAAGAAGGAAGACCAACA

CCAANNNNCCAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATAATATTGGCTTTG
TTAAATGTCTGTGTAGTTCACTTATCTTTTGAACTTTGTATATAAAATAT
TACTGTAAAGAACTTGGACATTCTAGGAAGCCAGTTAAACTAGAGCTTGC
TCTCTCCTGTTTTTAATATATTCTTTAAAAGGCCTTTCCTAGTTTCATGA
ATATAAAAACCGCTTCCTGTCTTGCCATCTGTTAGAAGTCAGCAAGCTGG
TCTACAGGCCAAGTTTGGTTCCTTTAAAATAGATAAAGTTGCTGTTCAGT
TAAGAGTATTGCCTTGTGGCTATTTTCCTACTAGCGTGGCAGAATTAACT
AGATTTATATGACCAAGAAAGCCTGAGTTTTGTACTGTGGCCTTTTATAG
TAACAGATTGTTGGCCCATGCTTTAGAATATTTATGGGTATGTTTTGTTT
TTTTTTTTTAGTGAGGTTTTGTTTACCATAAATACTGAGTAATTGGTTTT
TTAATTCCAGAATAGAAATCTGGCTGTTAACATACATTCAAGTTCTAGAA
GATCTGTCTTACTCCTAAATTCTGTTCCGTAAACAACATGGTGATAATTG
GTGAGGTTTTATATTAGAGGTGGTTTAGTGGAGTTGCTAAGAGCATTGAA
TAAGAGACTCGGTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_i14.g1 MSMg01no540_i14.g1 CHROMAT_FILE:
MSMg01no540_i14.g1 PHD_FILE: MSMg01no540_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:50 2005
         (634 letters)



>mm_chr12_32177367_32178398
          Length = 1032

 Score = 1162 bits (601), Expect = 0.0
 Identities = 625/633 (98%), Gaps = 2/633 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttataatattggctttgttaaatgtctgtgtagttcacttatcttttgaactttgtata 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 831 tttataatattggctttgttaaatgtctgtgtagttcatttatcttttgaactttgtata 772

                                                                       
Query: 61  taaaatattactgtaaagaacttggacattctaggaagccagttaaactagagcttgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 taaaatattactgtaaagaacttggacattctaggaagccagttaaactagagcttgctc 712

                                                                       
Query: 121 tctcctgtttttaatatattctttaaaaggcctttcctagtttcatgaatataaaaaccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tctcctgtttttaatatattctttaaaaggcctttcctagtttcatgaatataaaaaccg 652

                                                                       
Query: 181 cttcctgtcttgccatctgttagaagtcagcaagctggtctacaggccaagtttggttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cttcctgtcttgccatctgttagaagtcagcaagctggtctacaggccaagtttggttcc 592

                                                                       
Query: 241 tttaaaatagataaagttgctgttcagttaagagtattgccttgtggctattttcctact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tttaaaatagataaagttgctgttcagttaagagtattgccttgtggctattttcctact 532

                                                                       
Query: 301 agcgtggcagaattaactagatttatatgaccaagaaagcctgagttttgtactgtggcc 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 531 agcgtggcagaattaactagatttatatgaccaagaaagcctaagttttgtactgtggcc 472

                                                                       
Query: 361 ttttatagtaacagattgttggcccatgctttagaatatttatgggtatgttttgttttt 420
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 471 ttttatagtaacagattgttggcccatactttagaatatttatgggtgtgttttgttttt 412

                                                                       
Query: 421 tttttttagtgaggttttgtttaccataaatactgagtaattggttttttaattccagaa 480
           |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttttta-agtgatgttttgtttaccataaatactgagtaattggttttttaattccagaa 353

                                                                       
Query: 481 tagaaatctggctgttaacatacattcaagttctagaagatctgtcttactcctaaattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tagaaatctggctgttaacatacattcaagttctagaagatctgtcttactcctaaattc 293

                                                                       
Query: 541 tgttccgtaaacaacatggtgataattggtgaggttttatattagaggtggtttagtgga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 292 tgttccgtaaacaacatggtgataattggtgaggttttatattagaggtggtt-agtgga 234

                                            
Query: 601 gttgctaagagcattgaataagagactcggtta 633
           |||||||||||||||||||||||||||||||||
Sbjct: 233 gttgctaagagcattgaataagagactcggtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1032
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1022
Effective search space:   637728
Effective search space used:   637728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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