BAC Information

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BAC

Clone NameMSMg01-542P07
Chromosome12 (Build37)
Map Location 115,096,623 - 115,097,201
singlet/doubletsinglet
Overlap geneIgh
Upstream geneGpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16
Downstream geneIghv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542P07.T7 (MSMg01no542_p07.b1)MSMg01-542P07.TJ (MSMg01no542_p07.g1)
ACCAG608606AG608607
length747749
length of high quality
(start - end)		659 (53 - 711)579 (85 - 663)
definitionCHROMAT_FILE: MSMg01no542_p07.b1 PHD_FILE: MSMg01no542_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:09 2005CHROMAT_FILE: MSMg01no542_p07.g1 PHD_FILE: MSMg01no542_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTATACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTAAATTTATGTATTTATGTATTTATGTATTTATTTAT
TTATTTATTTATATTAGATATTTTCTTCATTTACATTTTAAATGCTATCC
CAAAAGTCCCCTATACCCTTTTACCTCTCTGCTCCCCAAACGACCCACTC
CTGCTTCCTGTCCCTGGCGTTCCCCTGTACTGGGGCATATAATCTTCACA
AGACCAAGGGCCTCTCATCCCATTGATGGCAGACTAGGCCATCCTCTGCT
ACATATGCAACTAAAGACACAAGCTCTGGGGGTTACTGGTTAGTTCATAT
TGTCCCACCTATGGGGTTGCAGATACCCTTAGCTCCTTGGGTACTTTCTC
TAGCTCCTTCATTGGGTGCCCTGTGTTCCATCCAATAGCTGACTGTGAGC
ATCCACTTCTGTATTTGCCAGGCACTGGCATAGCCACACAAGTGATAGCT
ATATCACGGTGCTGTCACAAAAAAAATCTTTCTGGTATATGCAATAGAGT
CTGGGTTTGGTGGTTGTTTATGGGATGGATTCTTGGGTGGAGCAGTCTCT
GGATGGTCCTTCCATCTCAGCTCTGAACTTTGTCTCTGTAACTCCTTCCA
TGGGTATAGCCAAAGCTTCTATACTCCACTGTCCCTTCTCAGNCTTTTCT
TCCTTTTCCATAATCAAAAGAGCAGATCTTCAATATTATCTTCTCAG

NAATTTTACCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTTCTTCCTGGT
CTGCATACAGAATCTCTTCTGCCCTGTATGGTGCTCTGCATTTTGTGTTT
ACGTCAGTGGTTATACTACATTTAAAGGTCATCAATAATGGGGCTGTTTA
TATCCCTCTGTGCATCAGCTTCTTACCACATGAGGGTGAGCTTAGTTCTA
CACAACGACAAAAGGAGGTGGGTTTGGTAGCGTAAGATCCAGGCCCAAGA
TGGACTATATTTCAATGCTATTGTGTAGACTGATATAAGTAATCTGGTCT
CAACATGTGCGCACAGACAGATGGACATACAGACAGACACACATACTCAC
ACAGACATTCACACTCACTCACTGAGAGAGAGACACAGAGAGAGACAGAG
ACAGACAGAGCACAGTCGGAGACAGAGAAACATAAACAGAGTGACAAAGA
GACAGAGAGACAAAGTAAACACAGAGACAGAAACATTGTAATAAGTAAAT
GAGCACAAAACTTGCATTACACAGGAAATGAGAAATTTGAAAAAACTTTT
ATGAAAGTCAATGATACTACACTCTATACTTGTAGAGAGAATTCCTTTAG
CGAGGCAATGTAGACACAGAGGAGGTCAGCCTTCCCTTCCCTCCATGTCT
TTCTGAATAGGCTGCAAGTCTCACTAACTAGGAGCTTTGTGTTCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_p07.g1 MSMg01no542_p07.g1 CHROMAT_FILE:
MSMg01no542_p07.g1 PHD_FILE: MSMg01no542_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:09 2005
         (579 letters)



>mm_chr12_115096423_115097401
          Length = 979

 Score = 1096 bits (567), Expect = 0.0
 Identities = 576/579 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcttcttcctggtctgcatacagaatctcttctgccctgtatggtgctctgcatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcttcttcctggtctgcatacagaatctcttctgccctgtatggtgctctgcatttt 260

                                                                       
Query: 61  gtgtttacgtcagtggttatactacatttaaaggtcatcaataatggggctgtttatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtttacgtcagtggttatactacatttaaaggtcatcaataatggggctgtttatatc 320

                                                                       
Query: 121 cctctgtgcatcagcttcttaccacatgagggtgagcttagttctacacaacgacaaaag 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctgtgcatcaacttcttaccacatgagggtgagcttagttctacacaacgacaaaag 380

                                                                       
Query: 181 gaggtgggtttggtagcgtaagatccaggcccaagatggactatatttcaatgctattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggtgggtttggtagcgtaagatccaggcccaagatggactatatttcaatgctattgt 440

                                                                       
Query: 241 gtagactgatataagtaatctggtctcaacatgtgcgcacagacagatggacatacagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagactgatataagtaatctggtctcaacatgtgcgcacagacagatggacatacagac 500

                                                                       
Query: 301 agacacacatactcacacagacattcacactcactcactgagagagagacacagagagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacacacatactcacacagacattcacactcactcactgagagagagacacagagagag 560

                                                                       
Query: 361 acagagacagacagagcacagtcggagacagagaaacataaacagagtgacaaagagaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagagacagacagagcacagtcggagacagagaaacataaacagagtgacaaagagaca 620

                                                                       
Query: 421 gagagacaaagtaaacacagagacagaaacattgtaataagtaaatgagcacaaaacttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 gagagacaaagtaaacacagagacagaaacattgtaataagtaaatgagtacaaaacttg 680

                                                                       
Query: 481 cattacacaggaaatgagaaatttgaaaaaacttttatgaaagtcaatgatactacactc 540
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cattacacaggaaatcagaaatttgaaaaaacttttatgaaagtcaatgatactacactc 740

                                                  
Query: 541 tatacttgtagagagaattcctttagcgaggcaatgtag 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatacttgtagagagaattcctttagcgaggcaatgtag 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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