NTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCCATGGGGCCCTTCTCGTCCTTCATTTTCTTACCATCTATCTA
GTTCTCCAATGATGCATTTCTCTCTATAATATCAATACCATACTAAAAAA
TGTTCTTAAAAAGAGGGATTTAGAAAAGTCGTTCTGTCAAACAGAAAAAA
AAAACCCACAGGACAAAATATATATGTTAGAAACCCTGAAGCAGGAGTAA
CTCAAGTTTGTCAAAGCTGCATATAGGGAAAACAAAACAAAACAAAACAA
AACAAAAAACCCAAAAATATACTGCTGTGCAGTGACAGAGAACATTTTCA
GATGGTCAATCTATTGCTGCATTGAAGAAAAGTGATTGAAAATGTTAAAT
TGGTCATTCGTAACCATAATTTTCCTGACAAAAGAGTCTACAAGTTGAAA
ACAGTTTATCCTTAATTTGAGTGCCCATCTTTAATGTTCAAACAAAATGT
GATAAATGTAAATATCATTTGGAAGTTGGACGTGGGGGTGTTTCATTGAG
GACATACATACTCTGCTATTTCTTTCTTTCCATCTTGCTATTCTTCTCTG
ATTTGTATGCTAAAAGGTGGAAAATCTGGATTTTTATGCAAATAAACTCC
AACAGATGATTCTCTGTAGTTATAGTTCAACTAACTCCAATGAAAAGAAT
ACTTAATCATCCACTCTAGATGTTGTCTATGTTTATTCTACTAAAATACA
TACTTTTCAAACACTAGAGTTCTCTTGTCACATN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGGAAGGATTGAGGGATCCAAAG
AAAACAGAGTCTCCACAGGAAAACCAACAGTGTCAACTAATCTGGACCCT
TGGGGGTTCCCAGAAACTCTAGCGCCAACCAAAGAGTGAGGTTCCCTACA
CCAAAACACAGGCAAATATGTAACAGATGTGCAGCTCAGTCTTTGTGCAG
GTCCCCACCAACTGGAGGGGGCTGTCCTTGACTGTGCTGCCTGCCTGTGG
ATCCAAGTCTCCTAAGTAGGCTGCCTTGTCTGACCTCAGAGGATGCACCT
AGTTCTGCAGTGACTTGATATGCCAGGGTTGGGCTGGGCTGTGGTGAGGT
GGAATCTGGATGGGGTGCTATCTAGAGGCAGTCTCCTCTGAGGAGGGAAG
TAGGGAATAAGGGAAGTATTTGAGTAAGGGTATTTTGTGGGAGGAGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNN

Query= MSMg01no543_a16.b1 MSMg01no543_a16.b1 CHROMAT_FILE:
MSMg01no543_a16.b1 PHD_FILE: MSMg01no543_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:16 2005
         (668 letters)



>mm_chr12_6906748_6907815
          Length = 1068

 Score = 1137 bits (588), Expect = 0.0
 Identities = 647/676 (95%), Gaps = 17/676 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcccatggggcccttctcgtccttcattttcttaccatctatctagttctccaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattctcccatggggcccttctcgtccttcattttcttaccatctatctagttctccaa 257

                                                                       
Query: 65  tgatgcatttctctctataatatcaataccatactaaaaaa-tgttcttaaaaagaggga 123
           |||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 258 tgatacatttctctctataatatcaataccgtactaaaaaaatgttcttaaaaagaggga 317

                                                                       
Query: 124 tttagaaaagtcgttctgtcaaacagaaaaaaaaaa-----------cccacaggacaaa 172
           ||||||||||||||||||||| ||||||||||||||           |||||||||||||
Sbjct: 318 tttagaaaagtcgttctgtcatacagaaaaaaaaaaaaaaaaacaaacccacaggacaaa 377

                                                                       
Query: 173 atatatatgttagaaaccctgaagcaggagtaactcaagtttgtcaaagctgcatatagg 232
           ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 378 atatatatgttagaaaccctgaaacaggagtaactcaagtctgtcaaagctgcatatagg 437

                                                                       
Query: 233 gaaaacaaaacaaaacaaaacaaaacaaaaaacccaaaaatatactgctgtgcagtgaca 292
           |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||
Sbjct: 438 gaaaacaaaacaaaacaaaacaaaa-----aacccaaaaatatactgctgtgcagtgaca 492

                                                                       
Query: 293 gagaacattttcagatggtcaatctattgctgcattgaagaaaagtgattgaaaatgtta 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 493 gagaacattttcagatggtcaatctattgctgcattgaagaaaagtgattgaaaatgata 552

                                                                       
Query: 353 aattggtcattcgtaaccataattttcctgacaaaagagtctacaagttgaaaacagttt 412
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 553 aattggtcattcgtaaccataattttcctgaaaaaagagtctacaagttgaaaacagttt 612

                                                                       
Query: 413 atccttaatttgagtgcccatctttaatgttcaaacaaaatgtgataaatgtaaatatca 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atccttaatttgagtgcccatctttaatgttcaaacaaaatgtgataaatgtaaatatca 672

                                                                       
Query: 473 tttggaagttggacgtgggggtgtttcattgaggacatacatactctgctatttctttct 532
           ||||||||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 673 tttggaagttgaacgtgggggtgtttcattgagggcatacacactcttctatttctttct 732

                                                                       
Query: 533 ttccatcttgctattcttctctgatttgtatgctaaaaggtggaaaatctggatttttat 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ttccatcttgctattcttctctgatttgtatgctaaaaggtggaaaatctggatttttat 792

                                                                       
Query: 593 gcaaataaactccaacagatgattctctgtagttatagttcaactaactccaatgaaaag 652
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 793 gcaaataaactccaacagatgattctctgttgttatagttcaactaactccaatgaaaag 852

                           
Query: 653 aatacttaatcatcca 668
           ||||||||||||||||
Sbjct: 853 aatacttaatcatcca 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)