Query= MSMg01no544_l05.b1 MSMg01no544_l05.b1 CHROMAT_FILE:
MSMg01no544_l05.b1 PHD_FILE: MSMg01no544_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:27 2005
(621 letters)
>mm_chr12_85311366_85312387
Length = 1022
Score = 1133 bits (586), Expect = 0.0
Identities = 610/618 (98%), Gaps = 1/618 (0%)
Strand = Plus / Plus
Query: 5 gaattccatagtgttcactctggatgaatttatgctccacaagtataatagctctttagc 64
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatagtgttcactctggacgaatttatgctccacaagtataatagctctttagc 264
Query: 65 aactccattggtacaagttagggtctggggggg-gggcatgcatgtagtagggcatctga 123
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 aactccattggtacaagttagggtctgggggggagggcatgcatgtagtagggcatctga 324
Query: 124 ggaggcccaaaggatggtattggtcaggtatcttaactttcatttatagttttgtccagc 183
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 ggaggcccaaaggatggtattggtcaggtatcttaagtttcatttatagttttgtccagc 384
Query: 184 tgtggtgggatttatcagctggggcttgtttttatcataacaatttggcctataaacata 243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtggtgggatttatcagttggggcttgtttttatcataacaatttggcctataaacata 444
Query: 244 gaaaagcattttgtctcagttgtagagcatttgctttgaaggcatgacgtgttggattaa 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 gaaaagcattttgtctcagttgtagagcatttgctttgaaggcacgacgtgttggattaa 504
Query: 304 gtctccagcactaacggtgaaaacaacagatgcttagagaagagacgggtactgaactga 363
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 505 gtctccagcactaacggtgaaaacaacagacgcttagagaagagacgggcactgaactga 564
Query: 364 agtctaaattcttatgctgaaggagaaaggcttgtcacctctttgcccacaagtatcttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtctaaattcttatgctgaaggagaaaggcttgtcacctctttgcccacaagtatcttc 624
Query: 424 ccaagaaacagcagagctctgagtggttttatacttttctttctttgtttgttttgtttt 483
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 ccaagaaacagcagagctctgagtggttttatacttttctttctttctttgttttgtttt 684
Query: 484 taagggtctccaaagcccgagctaactcctgaccttgctgcctctccctcccaagggcta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taagggtctccaaagcccgagctaactcctgaccttgctgcctctccctcccaagggcta 744
Query: 544 gtatataggcatatgcatccacattctgtccatctgccttttccacttaggttgtaggcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtatataggcatatgcatccacattctgtccatctgccttttccacttaggttgtaggcc 804
Query: 604 cgtatgcagactgctagt 621
||||||||||||||||||
Sbjct: 805 cgtatgcagactgctagt 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_l05.g1 MSMg01no544_l05.g1 CHROMAT_FILE:
MSMg01no544_l05.g1 PHD_FILE: MSMg01no544_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:27 2005
(654 letters)
>mm_chr12_85437859_85438908
Length = 1050
Score = 1222 bits (632), Expect = 0.0
Identities = 647/654 (98%), Gaps = 6/654 (0%)
Strand = Plus / Minus
Query: 1 tctgatatcaaatgtgaacaagtgaatgaggatatttttctaaattgtctttggtcaccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tctgatatcaaatgtgaacaagtgaatgaggatatttttctaaattgtctttggtcaccg 750
Query: 61 gattctgtgtggttactgttgagtctgtggctctgtttgcttgctgtgtttttatttttt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 749 gattctgtgtggttactgttgagtctgtggctctgtttgcttgctgtgttttta-ttttt 691
Query: 121 tcagactcatgcttttatacctataagcaaaggactaaattttcagttcttggttttgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tcagactcatgcttttatacctataagcaaaggactaaattttcagttcttggttttgca 631
Query: 181 tgcagtgagattccccacccctatatatatggaaacagtaaagataaagatagaggtgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tgcagtgagattccccacccctatatatatggaaacagtaaagataaagatagaggtgac 571
Query: 241 ctagcaaagctctgaatcctctgcacccagaaatgtagtatgttttaaacaagcctgggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctagcaaagctctgaatcctctgcacccagaaatgtagtatgttttaaacaagcctgggt 511
Query: 301 cttggtgtatcacatctgttggagccaaaaacctccgaggttccaggagatcaaagaaaa 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 510 cttggtgtatcacatctgttggagccaaaaacctccgaggttcc---agatcaaagaaag 454
Query: 361 cagcagattctgggattgatgaagttgcaatttattgacaaagtgtgtcttgagcaacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cagcagattctgggattgatgaagttgcaatttattgacaaagtgtgtcttgagcaacaa 394
Query: 421 aatacacaggtgggccgtggttataagagtgagtaccctaaaaccatctagcaaattttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aatacacaggtgggccgtggttataagagtgagtaccctaaaaccatctagcaaattttt 334
Query: 481 gtatgcaggggtaattttgggaaactctggaatttgttgttggtgtcaagtgatcctggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtatgcaggggtaattttgggaaactctggaatttgttgttggtgtcaagtgatcctggt 274
Query: 541 cccttgtaaatactgtcctctctttcacccctaaacttctcacagtactcctattgaagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cccttgtaaatactgtcctctctttcacccctaaacttctcacagtactcctattgaagt 214
Query: 601 gaatttttatatttgtgtgtgtgtgtgtgtgtgcacacacgtgtgcgtgtgtgt 654
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 213 gaatttttatatttgtgtgtgtgtgtgtgtg--cacacacgtgtgcgtgtgtgt 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1050
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1040
Effective search space: 669760
Effective search space used: 669760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
