BAC Information

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BAC

Clone NameMSMg01-544N21
Chromosome12 (Build37)
Map Location 29,854,620 - 30,019,654
singlet/doubletdoublet
Overlap geneLOC629608
Upstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik
Downstream geneMyt1l, LOC100043496, Pxdn, Tpo, Sntg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544N21.T7 (MSMg01no544_n21.b1)MSMg01-544N21.TJ (MSMg01no544_n21.g1)
ACCAG610065AG610066
length751758
length of high quality
(start - end)		661 (54 - 714)591 (78 - 668)
definitionCHROMAT_FILE: MSMg01no544_n21.b1 PHD_FILE: MSMg01no544_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:40 2005CHROMAT_FILE: MSMg01no544_n21.g1 PHD_FILE: MSMg01no544_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,018,998 - 30,019,654)(29,854,620 - 29,855,210)
sequence
NNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCCATGAACAGTCACACCCTCAAAGGCTCAACCTGGTA
CCGGCAGGGTTCCTACTTGGTACTGACATTCTAAAGGGATGTCACATTAT
AGGCCAACCCTTATATACCCAGCATAGAAGAGTTTTTCTCTTTCTTCATG
ATGGTAGTTTGTGGAGGAGAAGGTAGCATGGACCAGTTGTGACTCACAAG
CAGTTTGGTTCAAAATATAAGTCTGAAAGGGCATTTGAAAAGATAGGAAT
TATCCTCTTCTCTAAAACTTATCCACGAAGATTGGCAGGGGAACCTCCCA
GTAGTAAAGGTAACTCGAGCCCATCTAATAAGTAGGTTTTTGGGGTGAAA
GCACAGATCAGGGGTTCTCTCTCCACATCCTGGAATACAGTTGAGTCAAG
GACACCAGGAGTATAAATTATTGTGTCAAAATCCTGACATGGGTCAGAGG
TCACTATCAACTTGGTGCAGAGGCAGTATCTGCTGACATTTTCTCTCTCA
AGAGGTCTGCAGTCTCAAGCCAGCCTTATCTCCTATAATTACAGTTCTCT
CTAATCCATTTCTATGATTTCTGATTGTCTACTTCCTTTGGCCATCATGG
GGTGTGCCCTGGATGCATCTACCTTCTCCCTAGACAATGTATGGTAGGTA
GCTCAAGGGCTTGCCTTGGGTCCGTTCCCTCACACCATCCTTTCTGGGCG
T

NNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCATGGTGGTGTAACATTGC
AGCCCTGGGAGTGTTGGGACTAGGTCATCATCAGGTTGATGCCTATATTG
AGTCCTGGTAGTTTTATAGGAAAGGGGAGAGAGACCAGAAGATACGCATA
AGCTCTCAGTTCCTCACCATCCAACATTGTGCCTCCTTGAGACTTTGCCA
GCGAGAAGCTGTCACCAGATGACCCTGGATCTTTCACCTCCAGAAGTTGA
ACCTCTTTTCTTTATAGGGCTACCTAGTCTGTGGTTTTGTGTCACTAAGA
GAAGAAATGGACTGTCTGGATGAGGCCTCCCACTATTGGGATGGGCAATC
CCCCTTTACTTGCTATTTGCCAAGTCATCTGCCTTAGTCACTCTTCTGGT
GGTCAGAACACCTGACAGGGACAGCTTCGGGGAGGGGCTTCTTTTGGCTC
ACATATAGGAGGTAAGGTTTTTCTGGGAAAAGTGGGACAGTGCAGCCGCA
TGGCCCTGGAGTTCTATGCCAGTGGGTGACCACAATGTATCACAGGAGGA
ATCTGCCAGCAGAGGACTACATCAGACATAAATCACATATTGGTTGTTGG
TGAAAATACAGGGATCAGAGGCTGGTGCAAATCTGAAGCAGGGAGCTGTG
CACACCTACACATTAGCCAGTGGAGCTGTTCTGCAGATATTTTGGTCAAA
TATTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_n21.b1 MSMg01no544_n21.b1 CHROMAT_FILE:
MSMg01no544_n21.b1 PHD_FILE: MSMg01no544_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:40 2005
         (661 letters)



>mm_chr12_30018794_30019854
          Length = 1061

 Score = 1270 bits (657), Expect = 0.0
 Identities = 657/657 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccatgaacagtcacaccctcaaaggctcaacctggtaccggcagggttcctact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gaattcccatgaacagtcacaccctcaaaggctcaacctggtaccggcagggttcctact 802

                                                                       
Query: 65  tggtactgacattctaaagggatgtcacattataggccaacccttatatacccagcatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggtactgacattctaaagggatgtcacattataggccaacccttatatacccagcatag 742

                                                                       
Query: 125 aagagtttttctctttcttcatgatggtagtttgtggaggagaaggtagcatggaccagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagagtttttctctttcttcatgatggtagtttgtggaggagaaggtagcatggaccagt 682

                                                                       
Query: 185 tgtgactcacaagcagtttggttcaaaatataagtctgaaagggcatttgaaaagatagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgactcacaagcagtttggttcaaaatataagtctgaaagggcatttgaaaagatagg 622

                                                                       
Query: 245 aattatcctcttctctaaaacttatccacgaagattggcaggggaacctcccagtagtaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattatcctcttctctaaaacttatccacgaagattggcaggggaacctcccagtagtaa 562

                                                                       
Query: 305 aggtaactcgagcccatctaataagtaggtttttggggtgaaagcacagatcaggggttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtaactcgagcccatctaataagtaggtttttggggtgaaagcacagatcaggggttc 502

                                                                       
Query: 365 tctctccacatcctggaatacagttgagtcaaggacaccaggagtataaattattgtgtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctctccacatcctggaatacagttgagtcaaggacaccaggagtataaattattgtgtc 442

                                                                       
Query: 425 aaaatcctgacatgggtcagaggtcactatcaacttggtgcagaggcagtatctgctgac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaatcctgacatgggtcagaggtcactatcaacttggtgcagaggcagtatctgctgac 382

                                                                       
Query: 485 attttctctctcaagaggtctgcagtctcaagccagccttatctcctataattacagttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttctctctcaagaggtctgcagtctcaagccagccttatctcctataattacagttc 322

                                                                       
Query: 545 tctctaatccatttctatgatttctgattgtctacttcctttggccatcatggggtgtgc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctaatccatttctatgatttctgattgtctacttcctttggccatcatggggtgtgc 262

                                                                    
Query: 605 cctggatgcatctaccttctccctagacaatgtatggtaggtagctcaagggcttgc 661
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctggatgcatctaccttctccctagacaatgtatggtaggtagctcaagggcttgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no544_n21.g1 MSMg01no544_n21.g1 CHROMAT_FILE:
MSMg01no544_n21.g1 PHD_FILE: MSMg01no544_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:40 2005
         (591 letters)



>mm_chr12_29854420_29855410
          Length = 991

 Score = 1143 bits (591), Expect = 0.0
 Identities = 591/591 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcatggtggtgtaacattgcagccctgggagtgttgggactaggtcatcatcaggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttcatggtggtgtaacattgcagccctgggagtgttgggactaggtcatcatcaggtt 260

                                                                       
Query: 61  gatgcctatattgagtcctggtagttttataggaaaggggagagagaccagaagatacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgcctatattgagtcctggtagttttataggaaaggggagagagaccagaagatacgc 320

                                                                       
Query: 121 ataagctctcagttcctcaccatccaacattgtgcctccttgagactttgccagcgagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataagctctcagttcctcaccatccaacattgtgcctccttgagactttgccagcgagaa 380

                                                                       
Query: 181 gctgtcaccagatgaccctggatctttcacctccagaagttgaacctcttttctttatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtcaccagatgaccctggatctttcacctccagaagttgaacctcttttctttatag 440

                                                                       
Query: 241 ggctacctagtctgtggttttgtgtcactaagagaagaaatggactgtctggatgaggcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctacctagtctgtggttttgtgtcactaagagaagaaatggactgtctggatgaggcc 500

                                                                       
Query: 301 tcccactattgggatgggcaatccccctttacttgctatttgccaagtcatctgccttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccactattgggatgggcaatccccctttacttgctatttgccaagtcatctgccttag 560

                                                                       
Query: 361 tcactcttctggtggtcagaacacctgacagggacagcttcggggaggggcttcttttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcactcttctggtggtcagaacacctgacagggacagcttcggggaggggcttcttttgg 620

                                                                       
Query: 421 ctcacatataggaggtaaggtttttctgggaaaagtgggacagtgcagccgcatggccct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcacatataggaggtaaggtttttctgggaaaagtgggacagtgcagccgcatggccct 680

                                                                       
Query: 481 ggagttctatgccagtgggtgaccacaatgtatcacaggaggaatctgccagcagaggac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggagttctatgccagtgggtgaccacaatgtatcacaggaggaatctgccagcagaggac 740

                                                              
Query: 541 tacatcagacataaatcacatattggttgttggtgaaaatacagggatcag 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tacatcagacataaatcacatattggttgttggtgaaaatacagggatcag 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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